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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagctctccttccttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgatgtgatgagctttattaacctactgcgatt...

Basic information

species Zea mays
transcript GRMZM2G392975_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g44630.3 (Oryza sativa), 5'ss of exon 1
AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagctctccttc--cttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgatgtgatgagctttattaacctactgcgatt
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||   ||||||||   |||||| ||               |  |  |     |    |     | ||   || |  |  ||  ||    |     |  
AAGTCCTCCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtcagttcactctcctttggcttcctcccccaccttcaagatctcaagtcttcaactttgtcatgattttgccttggtttgtcttgctagttgatactta--

upper sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA11G35030.1 (Glycine max), 5'ss of exon 1
AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtct-gtcagctctccttccttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgat-gtgatgagctttattaacctactgcgatt
| ||||| ||||||||| || || || ||||| || ||||| || ||| ||||||| || ||||||||||| ||||| |||||||| || |||||||| ||| |  |||    |  |   | |  | | | ||| |  || |  |    |   |        ||  | | ||  |  | ||  ||||| |   |        
AGGTCCAGCTCCAAGTGTGCTACTGTTGGCATTCAAGGCATTGCTTGGGCCTTCGGTGGCATGATCTTCGCTCTCGTTTACTGCACTGCTGGCATCTCTGgtatcatcataaattatatatgctcttcattttgattttgattatattattggtccatttaggatctctaatcatacttagtgttattgattcag-------

upper sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA14G06680.5 (Glycine max), 5'ss of exon 2
AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagctctccttccttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgatgtgatgagctttattaacctactgcgatt
  | | |  || |||||    ||||| || || || || ||||| ||| ||||||| || ||||||||||| ||||| ||||||||||| |||||||| |||| |     | |  ||| ||| || |||  |    |    ||| |               |  | ||      | |   ||| ||    |  ||     
GGGGCTAAGTCTAAGTGTAGTACCGTTGGGATTCAAGGAATCGCTTGGGCCTTCGGTGGCATGATCTTCGCCCTCGTTTACTGCACCGCTGGCATCTCAGgtccgct--ttttttttctttcttttcttaatttctcaaaagctagaaaaaaaaaattaatgtaaagttgaacaacgttgtttgtttgtatg-tgtag--

upper sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA02G42220.3 (Glycine max), 5'ss of exon 1
AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagctctccttccttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgatgtgatgagctttattaacctactgcgatt
  | | |  || ||||||   ||||| || || || || ||||| ||| ||||||| || ||||||||||| ||||| ||||||||||| |||||||| |||| ||    | |   || ||| || |||       |    ||| |           |      | || |    | |   ||| ||    |  ||     
GGGGCTAAGTCTAAGTGCAGTACCGTTGGGATTCAAGGAATCGCTTGGGCCTTCGGTGGCATGATCTTCGCCCTCGTTTACTGCACCGCTGGCATCTCAGgtccgt---ttttttctctttcttttcttaacttctcaaaagctagaaaaaa----aaaatataaagttaaacaacgttgtttgttcgtatg-tgtag--

upper sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv13s0067g00220.t01 (Vitis vinifera), 5'ss of exon 1
AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagctctccttccttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgatgtgatgagctttattaacctactgcgatt
| | |   |||||||||  |||| || || || || || || || ||| | || || || ||||||||||| |||||||||||||||||||| ||||| |||      | |  ||||   ||       |||    ||  | |  |  | |  |   ||      ||||||| || |     |  |  |    |||    
AGGGCTGACTCCAAGTGTTCCACGGTTGGGATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTCGCTCTCGTCTACTGCACCGCCGGAATCTCAGgt------gatggccttttctcgaaaaaccttttgtctatttcatgtatgtaatatgaga-attctgtgatgagacggaaagtggtggc--ggtgcag--

upper sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
lower sequence: PP1S102_107V6.1 (Physcomitrella patens), 5'ss of exon 1
--AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtc-agctctccttccttccttc---cttcttgctgctgctgctggcttcttt-----ttccagccgacatgtgatgtgatgagctttattaacctactgcgatt---------------
  ||   ||   ||   |||      ||||| || || |||||||||||| | ||||| || |||||||| ||||||||||| ||||| || || ||||| |||    | | ||| ||||     | |     ||        | ||||  |  || |      || ||        || |  | |   | | || | | |||    |                  
CGAAACACAGACCCC--TGCTTGGGGGTCGGAATTCAAGGCATCGCCTGGGCGTTCGGTGGAATGATCTTTGCGCTCGTCTATTGCACAGCAGGAATCTCAGgttaaactacctccccttagcagcatgaagttttaaaaaatttctgcaagtatcatgagaagttgcaaaaccagggttacattagctggtatagtgatctaacaaggccgttatgtctctacag

upper sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ18960 (Selaginella moellendorffii), 5'ss of exon 1
AAGTCCACCTC--CAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagctctccttccttccttccttcttgctgctgctgctggcttc---tttttccagccgacatgtgatgtgatgagctttattaacctactgcgatt
  ||| | | |  ||  |||      || ||||||||||||||||| ||| | || || || |||||||| || |||||||||||||| || || ||||| |||     || |    ||  ||  |||||    | ||  |     |   |    ||| | |   ||| |  | || |   | |   | ||  ||     |    
--GTCGATCGCACCAGCTGCCTTGGAGTGGGCATCCAGGGCATCGCGTGGGCTTTTGGGGGCATGATCTTTGCTCTCGTCTACTGCACTGCTGGAATCTCAGgtac-caagatgagtttttttgtttcctgtgaggtgtggtgttcgagctaaagtttgttcttgcgaaactttatctcgggtgtggtgttgtcccgaaactt--

upper sequence: GRMZM2G392975_T01 (Zea mays), 5'ss of exon 2
lower sequence: EFJ11572 (Selaginella moellendorffii), 5'ss of exon 1
AAGTCCACCTC--CAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagctctccttccttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgatgtgatgagctt--tattaaccta-ctgcgatt------------------------------------------------------------------------------------
  ||| | | |  ||  |||      || ||||||||||||||||| ||| | || ||||| |||||||| || |||||||||||||| ||||| ||||| |||             ||      |||   ||      | ||   |     ||    | |  |   |||  |      |  ||  |  |   ||| ||    ||                                                                                    
--GTCGATCGCACCAGCTGCCTTGGAGTGGGCATCCAGGGCATCGCGTGGGCTTTTGGAGGCATGATCTTTGCTCTCGTCTACTGCACTGCCGGAATCTCAGgtaccaagatgagttttttggtgttcgagctaaagtgttcttgcgaaactttacctcgggtgtggtgttgtcccgaaactttggtgctgttctagctaaagtttcgcgagttctagtgttccagcgaaagttttcgtgcgagactggaaaccatagctaaaagcttgacatgttttgtttttctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211491998|gb|FL100854.1|FL100854
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACC
EST: gi|148936891|gb|EC881041.2|EC881041
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|149079702|gb|EE168703.2|EE168703
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|76923442|gb|DV169489.1|DV169489
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|76285262|gb|DV024830.1|DV024830
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|211492001|gb|FL100857.1|FL100857
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGGCAGAAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|149073721|gb|EE162029.2|EE162029
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|211486225|gb|FL100819.1|FL100819
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACC
EST: gi|21331663|gb|BQ487044.1|BQ487044
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|9794462|gb|BE552770.1|BE552770
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|148931929|gb|EC875151.2|EC875151
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|149027196|gb|EE046413.2|EE046413
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|148969388|gb|EE020180.2|EE020180
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATC
EST: gi|78086576|gb|DV514969.1|DV514969
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|148942037|gb|EC887032.2|EC887032
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|60341153|gb|DN208126.1|DN208126
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|211489110|gb|FL100837.1|FL100837
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|76012460|gb|DT939630.1|DT939630
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|211492002|gb|FL100858.1|FL100858
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCA                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|71330068|gb|DR801773.1|DR801773
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|211489119|gb|FL100846.1|FL100846
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|71444238|gb|DR825288.1|DR825288
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|5268802|gb|AI770766.1|AI770766
EST:     CTTCGGAGGGATGATCTTCGCGCTCGNCTACTGCACCGNCGGCATCTNCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGNTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|71435834|gb|DR816884.1|DR816884
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|149111018|gb|EE294517.2|EE294517
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|149099303|gb|EE185339.2|EE185339
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|211492005|gb|FL100861.1|FL100861
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|94472445|gb|EB701403.1|EB701403
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|211493182|gb|FL033666.1|FL033666
EST:     GATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: GATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|31350056|gb|CD434413.1|CD434413
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|148999413|gb|EE036363.2|EE036363
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|50335967|gb|CO531093.1|CO531093
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|211491997|gb|FL100853.1|FL100853
EST:     TCGGAGGGATGATCTTTCGCGCTCGTCTACTGCACCGCCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCG
genomic: TCGGAGGGATGATCTT-CGCGCTCGTCTACTGCACCGCC-GGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCG
EST: gi|148936470|gb|EC880575.2|EC880575
EST:     CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
genomic: CTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAGC
EST: gi|71434061|gb|DR815111.1|DR815111
EST:     TCGGAGGGATGATCTTCGCGCTTCGTCTACTGCACCCGCCGGCATCTCCG                         GAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAAAG
genomic: TCGGAGGGATGATCTTCGCGCT-CGTCTACTGCACC-GCCGGCATCTCCGgtctgtcagc ... gcaacaacagGAGGACACATCAACCCAGCTGTGACCTTCGGGCTGTTCTTGGCCAGGAA-G

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGTCCACCTCCAAGTGCGCCACCGTCGGCATCCAGGGCATCGCCTGGTCCTTCGGAGGGATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGgtctgtcagctctccttccttccttccttcttgctgctgctgctggcttctttttccagccgacatgtgatgtgatgagctttattaacctactgcgatt

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