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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGCCGCGACCGTGGGCGGCTGTCGGCGGCAGGAGACGCTTCTCCGTGCGGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgctctctcgatcagcttcagttttttagcggccctttttctgcttctcgaccttcgcgctagctggccatgatcccatgacaattcacgagggtttcgtttggggtgcgtggtgcag

Basic information

species Zea mays
transcript GRMZM2G391936_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G391936_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g52460.1 (Oryza sativa), 5'ss of exon 1
GACGCCGCGACCGTGGGCGGCTGTCGGCGGCAGGAG---ACGCTTCTCCGTGCGGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtt----tgctctctcgatcagcttcagttttttagcggccctttttctgcttctcgaccttcgcgc-tagctggccatgatcccatgacaattcacgagggttt-cgtttggggtgcgtg-gtgcag-----------------------------
| ||  | ||    | |  |  |  || ||  || |    ||  |||||||||||| |||||||||||||||||||||| || || ||   ||||||||||||||||||     |||||||||  ||    ||  | | |      | || | |||   |||| |  |       ||  |    ||      ||    ||  |      | |   | |  |  ||| | | || |                             
GGCGGTGGGAGGAGGAGGAGGAGGAGGAGGACGGGGCCGGCGTCTCTCCGTGCGGACGTCCGTCGCGACCACCGAGGCCGCCGCCGCC---GCCGTGGGCGCCgtcagtgcacatgctctctctctctctctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtcgcgcgcgcgcggtgcttgatttgtttttcgtggtgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211117829|gb|FL303273.1|FL303273
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGTGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211114652|gb|FL303214.1|FL303214
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211117031|gb|FL303251.1|FL303251
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211118614|gb|FL303275.1|FL303275
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211115439|gb|FL303219.1|FL303219
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|149101455|gb|EE187574.2|EE187574
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211117035|gb|FL303255.1|FL303255
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTANGAACTCCNAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211115452|gb|FL303232.1|FL303232
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211117818|gb|FL303262.1|FL303262
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211115451|gb|FL303231.1|FL303231
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|71323467|gb|DR798383.1|DR798383
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211116242|gb|FL303246.1|FL303246
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211117826|gb|FL303270.1|FL303270
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211115441|gb|FL303221.1|FL303221
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211116238|gb|FL303242.1|FL303242
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211114656|gb|FL303218.1|FL303218
EST:     GGAAGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGAACAGGCGCTGGAGGCTAGGAAACTCCAAGAACGGTGGTGGCGG
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAA-CTCCAAGA-CGGTGGTGGCGG
EST: gi|71429963|gb|DR811013.1|DR811013
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211115450|gb|FL303230.1|FL303230
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|149102318|gb|EE188184.2|EE188184
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|71435811|gb|DR816861.1|DR816861
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211114649|gb|FL303211.1|FL303211
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211118621|gb|FL303282.1|FL303282
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211118620|gb|FL303281.1|FL303281
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211116232|gb|FL303236.1|FL303236
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211117029|gb|FL303249.1|FL303249
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211116236|gb|FL303240.1|FL303240
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTNGGTGGCGGT
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGT-GGTGGCGGT
EST: gi|211118617|gb|FL303278.1|FL303278
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|93281648|gb|EB673912.1|EB673912
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211118626|gb|FL303287.1|FL303287
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|94478446|gb|EB707404.1|EB707404
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211117028|gb|FL303248.1|FL303248
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|91874078|gb|EB404035.1|EB404035
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211117038|gb|FL303258.1|FL303258
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211118618|gb|FL303279.1|FL303279
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211114653|gb|FL303215.1|FL303215
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|13178427|gb|BG349685.1|BG349685
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211117825|gb|FL303269.1|FL303269
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211114650|gb|FL303212.1|FL303212
EST:     GATGTCCGTCGCGACCACCGAGGCCACCACCANCCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GATGTCCGTCGCGACCACCGAGGCCACCACCA-CCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211115446|gb|FL303226.1|FL303226
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|76291271|gb|DV030839.1|DV030839
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211117036|gb|FL303256.1|FL303256
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211114651|gb|FL303213.1|FL303213
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211117033|gb|FL303253.1|FL303253
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|13125860|gb|BG316430.1|BG316430
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGCGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCG
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCG
EST: gi|211117819|gb|FL303263.1|FL303263
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211115440|gb|FL303220.1|FL303220
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211118623|gb|FL303284.1|FL303284
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|50335822|gb|CO530948.1|CO530948
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|78103576|gb|DV522004.1|DV522004
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211116235|gb|FL303239.1|FL303239
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211118616|gb|FL303277.1|FL303277
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211116234|gb|FL303238.1|FL303238
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|37423745|gb|CF649601.1|CF649601
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAAGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211188332|gb|FL329946.1|FL329946
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211114648|gb|FL303210.1|FL303210
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211116237|gb|FL303241.1|FL303241
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
EST: gi|211117822|gb|FL303266.1|FL303266
EST:     GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCC                         TCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC
genomic: GGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 3 RNA-Seq libraries.


Block sizes: 37 (upstream exon), 49 (downstream exon)
Score: 18

GACGCCGCGACCGTGGGCGGCTGTCGGCGGCAGGAGACGCTTCTCCGTGCGGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTCATCCTCGGCGGTGGCGCCGGGACCAGGCTCTTCCCGCTTACCAGACGCA


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 251

GACGCCGCGACCGTGGGCGGCTGTCGGCGGCAGGAGACGCTTCTCCGTGCGGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTCATCCTCGGCGGTGGCGCCGGGACCAGGCTCTTCCCGCTTACCAGACGCA


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 113

GACGCCGCGACCGTGGGCGGCTGTCGGCGGCAGGAGACGCTTCTCCGTGCGGATGTCCGTCGCGACCACCGAGGCCACCACCACCATCGCCGTGGGCGCCgtcagtttgc ... cgtggtgcagTCGGAGGACCAGGCGCTGGAGGCTAGGAACTCCAAGACGGTGGTGGCGGTCATCCTCGGCGGTGGCGCCGGGACCAGGCTCTTCCCGCTTACCAGACGCA