Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCATTCGATCGCCTCACCCGAAGCACATCCCGTCGCATCCCATCCCACTACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGgtgagtctccggatccgtcgccgtctggtctccgtgtgctctcatcgccgtcgccgccgtctgactgaccccctcgcctcccgcggcgtcgggtctctggtgctgctgctgctgctgcgtgcagggcag

Basic information

species Zea mays
transcript GRMZM2G382914_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211473928|gb|FL050286.1|FL050286
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211461279|gb|FL050207.1|FL050207
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211466334|gb|FL050234.1|FL050234
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|29945363|gb|CB815601.1|CB815601
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211461276|gb|FL050204.1|FL050204
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211458751|gb|FL050187.1|FL050187
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211458752|gb|FL050188.1|FL050188
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211371336|gb|FL050138.1|FL050138
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211461277|gb|FL050205.1|FL050205
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|67031113|gb|CO459862.1|CO459862
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|31355954|gb|CD440311.1|CD440311
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211468859|gb|FL050250.1|FL050250
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211371344|gb|FL050146.1|FL050146
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211463808|gb|FL050227.1|FL050227
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211371340|gb|FL050142.1|FL050142
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211468858|gb|FL050249.1|FL050249
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211458754|gb|FL050190.1|FL050190
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211466330|gb|FL050230.1|FL050230
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|29945078|gb|CB815458.1|CB815458
EST:     TCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211463803|gb|FL050222.1|FL050222
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211471388|gb|FL050261.1|FL050261
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211044127|gb|FL234527.1|FL234527
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211374002|gb|FL050160.1|FL050160
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|6536594|gb|AW224907.1|AW224907
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211376662|gb|FL050171.1|FL050171
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211376660|gb|FL050169.1|FL050169
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|5342995|gb|AI795300.1|AI795300
EST:     CACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: CACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211371346|gb|FL050148.1|FL050148
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211463802|gb|FL050221.1|FL050221
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211373999|gb|FL050157.1|FL050157
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|29544513|gb|CB604893.1|CB604893
EST:     CCGATTCGATCCGG-TCTTCCAACCCAGGGG                        
genomic: CCGATTCGATCCGGTTCTTCCAACCCA--GGgtgagtctcc ... tgcagggca
EST: gi|29544513|gb|CB604893.1|CB604893
EST:     CCGATTCGATCCGG-TCTTCCAACCCAGGGG                        
genomic: CCGATTCGATCCGGTTCTTCCAACCCA--GGgtgagtctcc ... tgcagggca
EST: gi|29544513|gb|CB604893.1|CB604893
EST:     CCGATTCGATCCGG-TCTTCCAACCCAGGGG                        
genomic: CCGATTCGATCCGGTTCTTCCAACCCA--GGgtgagtctcc ... tgcagggca
EST: gi|31406032|gb|CD484764.1|CD484764
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211471387|gb|FL050260.1|FL050260
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211463807|gb|FL050226.1|FL050226
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211466341|gb|FL050241.1|FL050241
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211473927|gb|FL050285.1|FL050285
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211371343|gb|FL050145.1|FL050145
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211471390|gb|FL050263.1|FL050263
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|31353610|gb|CD437967.1|CD437967
EST:     TACCACCCATCTCCTTGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211371337|gb|FL050139.1|FL050139
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211368691|gb|FL050132.1|FL050132
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211371341|gb|FL050143.1|FL050143
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211471393|gb|FL050266.1|FL050266
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|108953083|gb|EC364575.1|EC364575
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211468853|gb|FL050244.1|FL050244
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211473921|gb|FL050279.1|FL050279
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|149089819|gb|EE179096.2|EE179096
EST:     CGTCGTCCGCCGATTCCATCCGGTTCTTCCCACCCAGGGGCAG                         TGATGGCGACGAAGAGGAGCGTGGGCCCCCTCGGCGAGGCGGATCTGAAG
genomic: CGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagggcagTGATGGCGACGAAGAGGAGCGTGGGCACCCTCGGCGAGGCGGATCTGAAG
EST: gi|211376665|gb|FL050174.1|FL050174
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211458755|gb|FL050191.1|FL050191
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211471392|gb|FL050265.1|FL050265
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211466337|gb|FL050237.1|FL050237
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211373998|gb|FL050156.1|FL050156
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211466342|gb|FL050242.1|FL050242
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211466328|gb|FL050228.1|FL050228
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211468862|gb|FL050253.1|FL050253
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGG                         TGATGGCGACGAAGAGGAGCGTGGGCACCCTCGGCGAGGCGGATCTGAAGG
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGgtgagtctcc ... tgcagggcagTGATGGCGACGAAGAGGAGCGTGGGCACCCTCGGCGAGGCGGATCTGAAGG
EST: gi|211471397|gb|FL050270.1|FL050270
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211458749|gb|FL050185.1|FL050185
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211458757|gb|FL050193.1|FL050193
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211376672|gb|FL050181.1|FL050181
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211473922|gb|FL050280.1|FL050280
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211374005|gb|FL050163.1|FL050163
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211463801|gb|FL050220.1|FL050220
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|4776084|gb|AI665087.1|AI665087
EST:     CCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: CCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211461278|gb|FL050206.1|FL050206
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|6636954|gb|AW261226.1|AW261226
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211458756|gb|FL050192.1|FL050192
EST:     GATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: GATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|22935592|gb|BU571867.1|BU571867
EST:     CCATCTCGTCGTCCGCCGATTCGATCCGG-TCTTCCAACCCAGGGGCTG                     
genomic: CCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211458759|gb|FL050195.1|FL050195
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|22715290|gb|BU197684.1|BU197684
EST:     GTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: GTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211461281|gb|FL050209.1|FL050209
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGG                         TGATGGCGACGAAGAGGAGCGTGGGCACCCTCGGCGAGGCGGATCTGAAGG
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGgtgagtctcc ... tgcagggcagTGATGGCGACGAAGAGGAGCGTGGGCACCCTCGGCGAGGCGGATCTGAAGG
EST: gi|211471389|gb|FL050262.1|FL050262
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211461283|gb|FL050211.1|FL050211
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211461273|gb|FL050201.1|FL050201
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGG                         TGATGGCGACGAAGAGGAGCGTGGGCACCCTCGGCGAGGCGGATCTGAAGG
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGgtgagtctcc ... tgcagggcagTGATGGCGACGAAGAGGAGCGTGGGCACCCTCGGCGAGGCGGATCTGAAGG
EST: gi|67015745|gb|CO444494.1|CO444494
EST:     ACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGTGCTG                     
genomic: ACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|31909251|gb|CD650825.1|CD650825
EST:     CGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: CGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|67014158|gb|CO442907.1|CO442907
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGCTG                      
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA--G--Ggtgagtctcc ... tgcaggg
EST: gi|67016329|gb|CO445078.1|CO445078
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211368692|gb|FL050133.1|FL050133
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211461274|gb|FL050202.1|FL050202
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGG                        
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA--GGgtgagtctcc ... tgcagggca
EST: gi|211461274|gb|FL050202.1|FL050202
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGG                        
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA--GGgtgagtctcc ... tgcagggca
EST: gi|211461274|gb|FL050202.1|FL050202
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGG                        
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA--GGgtgagtctcc ... tgcagggca
EST: gi|211461274|gb|FL050202.1|FL050202
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGG                        
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA--GGgtgagtctcc ... tgcagggca
EST: gi|24769994|gb|CA405123.1|CA405123
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211463800|gb|FL050219.1|FL050219
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211371339|gb|FL050141.1|FL050141
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|31356119|gb|CD440476.1|CD440476
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211458750|gb|FL050186.1|FL050186
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|21390091|gb|BQ528140.1|BQ528140
EST:     TCTTCCAACCCAGGGG                        
genomic: TCTTCCAACCCA--GGgtgagtctcc ... tgcagggca
EST: gi|21390091|gb|BQ528140.1|BQ528140
EST:     TCTTCCAACCCAGGGG                        
genomic: TCTTCCAACCCA--GGgtgagtctcc ... tgcagggca
EST: gi|211371338|gb|FL050140.1|FL050140
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|31351413|gb|CD435770.1|CD435770
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211473923|gb|FL050281.1|FL050281
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211468861|gb|FL050252.1|FL050252
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211371342|gb|FL050144.1|FL050144
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211461270|gb|FL050198.1|FL050198
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGG                         G
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGgtgagtctcc ... tgcagggcag-
EST: gi|211461270|gb|FL050198.1|FL050198
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGG                         G
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGgtgagtctcc ... tgcagggcag-
EST: gi|211461270|gb|FL050198.1|FL050198
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGG                         G
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGgtgagtctcc ... tgcagggcag-
EST: gi|211461270|gb|FL050198.1|FL050198
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGG                         G
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGgtgagtctcc ... tgcagggcag-
EST: gi|211368693|gb|FL050134.1|FL050134
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|71762961|gb|DR960898.1|DR960898
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211468863|gb|FL050254.1|FL050254
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|48690738|gb|CO049273.1|CO049273
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|31360995|gb|CD445352.1|CD445352
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211473926|gb|FL050284.1|FL050284
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211374001|gb|FL050159.1|FL050159
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211461271|gb|FL050199.1|FL050199
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211466336|gb|FL050236.1|FL050236
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211466333|gb|FL050233.1|FL050233
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211468855|gb|FL050246.1|FL050246
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211458760|gb|FL050196.1|FL050196
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211374009|gb|FL050167.1|FL050167
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|78026883|gb|DV495270.1|DV495270
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211373997|gb|FL050155.1|FL050155
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|31250118|gb|CD219142.1|CD219142
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCAG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211468866|gb|FL050257.1|FL050257
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg
EST: gi|211468864|gb|FL050255.1|FL050255
EST:     TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGGGCTG                     
genomic: TACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCA---G--Ggtgagtctcc ... tgcagg

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 92

GTCCATTCGATCGCCTCACCCGAAGCACATCCCGTCGCATCCCATCCCACTACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGgtgagtctcc ... tgcagggcagTGATGGCGACGAAGAGGAGCGTGGGCACCCTCGGCGAGGCGGATCTGAAGGGGAAGAAGGTGTTCGTGCGCGCCGACCTCAACGTCCCGCTCGACGATGC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 61

GTCCATTCGATCGCCTCACCCGAAGCACATCCCGTCGCATCCCATCCCACTACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGgtgagtctcc ... tgcagggcagTGATGGCGACGAAGAGGAGCGTGGGCACCCTCGGCGAGGCGGATCTGAAGGGGAAGAAGGTGTTCGTGCGCGCCGACCTCAACGTCCCGCTCGACGATGC


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 32

GTCCATTCGATCGCCTCACCCGAAGCACATCCCGTCGCATCCCATCCCACTACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGgtgagtctcc ... tgcagggcagTGATGGCGACGAAGAGGAGCGTGGGCACCCTCGGCGAGGCGGATCTGAAGGGGAAGAAGGTGTTCGTGCGCGCCGACCTCAACGTCCCGCTCGACGATGC


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 69

GTCCATTCGATCGCCTCACCCGAAGCACATCCCGTCGCATCCCATCCCACTACCACCCATCTCGTCGTCCGCCGATTCGATCCGGTTCTTCCAACCCAGGgtgagtctcc ... tgcagggcagTGATGGCGACGAAGAGGAGCGTGGGCACCCTCGGCGAGGCGGATCTGAAGGGGAAGAAGGTGTTCGTGCGCGCCGACCTCAACGTCCCGCTCGACGATGC