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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGATTGACCAGGCGGTGCGCGGGTGCAGCGACCGCCGCATGCGCACCAAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcccctccttcacatcctgagacgggggcgcgcggattgggttagtggcgccatcggaggtgtgtggttccgcgatgatccagtagggaggga...

Basic information

species Zea mays
transcript GRMZM2G381933_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G381933_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g15490.3 (Oryza sativa), 5'ss of exon 1
TGGAGATTGACCAGGCGGTGCGCGGGTGCAGCGACCGCCGCATGCGCACCAAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcccctccttcacatcctgagacgggggcgcgcggattgggt--tagtggcgccatcggaggtg-tgtggttccgcgatgatccagtagggaggga
||||||| |||| ||||||||| ||| |||||||||||||| |||| |||||||||  |||||||||||||||||| ||||| |||||||||||||||||||| ||  |||| || ||    ||     |     | |  |  | | ||  ||| || |     || |||| |||  |  | |||||||  |  |  | |   
TGGAGATCGACCGGGCGGTGCGGGGGAGCAGCGACCGCCGCCTGCGGACCAAGTACGACAACGCCGTCTACGTCGTGCAGCGAGCCTTCGCGCTCTACCCgtacgcgccccccccctcctccccccctcccctctcactagattcgtgtggtagcggtgatggtggtggtggtgtcttagctcgatgatg-atcaacgcga--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211135348|gb|FL006467.1|FL006467
EST:     AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC                         ATTTGAGGAAGTNNGCCT-CAGCTTTAATGGTGGGAAAGATTCAACTGTGC
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTT-GCCTTCAGCTTTAATGGTGGGAAGGATTCAACTGTGC
EST: gi|211136283|gb|FL006475.1|FL006475
EST:     AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC                         ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
EST: gi|211136285|gb|FL006477.1|FL006477
EST:     AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC                         ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
EST: gi|6536592|gb|AW224905.1|AW224905
EST:     AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC                         ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
EST: gi|211136284|gb|FL006476.1|FL006476
EST:     AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC                         ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
EST: gi|74242522|gb|DT650436.1|DT650436
EST:     AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC                         ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
EST: gi|31353159|gb|CD437516.1|CD437516
EST:     AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC                         ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
EST: gi|211136280|gb|FL006472.1|FL006472
EST:     AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC                         ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
EST: gi|211135349|gb|FL006468.1|FL006468
EST:     AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC                         ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
EST: gi|211135352|gb|FL006471.1|FL006471
EST:     AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCC                         ATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT
genomic: AAGTACAGCAACGCCGTCTACGTCGTCCAGCGGGCCTTCGCGCTCTACCCgtaagcttcc ... cactttacagATTTGAGGAAGTTGCCTTCAGCTTTAATGGTGGGAAGGATTCAACT