1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGCCACCGCCACCTCTCCGGGCTCGAGGAGGCCGTGCTCAAGAACATCGACGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACGgtgagtcgtgctccgcgtgctccttcgtttcgttggcgcgggttgtgggctcggtggcggttaatcgagtgagaggatctgcagcgaggatagcgtgttc...
species | Zea mays |
transcript | GRMZM2G381744_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACG GAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACGEST: gi|211014871|gb|FL418131.1|FL418131
genomic: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACGgtgagtcgtg ... ttttatgtagGAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACG GAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACGEST: gi|20300534|gb|BQ163477.1|BQ163477
genomic: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACGgtgagtcgtg ... ttttatgtagGAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACG GAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACGEST: gi|211339572|gb|FL426264.1|FL426264
genomic: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACGgtgagtcgtg ... ttttatgtagGAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: CGCCTGCYGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACG GAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACGEST: gi|149104057|gb|EE289489.2|EE289489
genomic: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACGgtgagtcgtg ... ttttatgtagGAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACG GAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACGEST: gi|19770569|gb|BQ035290.1|BQ035290
genomic: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACGgtgagtcgtg ... ttttatgtagGAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACG GAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACGEST: gi|148938415|gb|EC882734.2|EC882734
genomic: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACGgtgagtcgtg ... ttttatgtagGAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACG GAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACGEST: gi|149014798|gb|EE044495.2|EE044495
genomic: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACGgtgagtcgtg ... ttttatgtagGAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACG GAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACGEST: gi|211284199|gb|FL390132.1|FL390132
genomic: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACGgtgagtcgtg ... ttttatgtagGAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
EST: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACG GAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
genomic: CGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACGgtgagtcgtg ... ttttatgtagGAATGAACAAGATGGTTATCAATCACTTGGACAAGCTGTTTGTCACAAACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCACCGCCACCTCTCCGGGCTCGAGGAGGCCGTGCTCAAGAACATCGACGCCTGCCGCGAGCTCTCCGCCATCACGCGCACATCCCTGGGCCCCAACGgtgagtcgtgctccgcgtgctccttcgtttcgttggcgcgggttgtgggctcggtggcggttaatcgagtgagaggatctgcagcgaggatagcgtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctccttc