1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAGGGGAAGGTCGATGGCGACGTGTTCTCGCCCGCTCTTCGTCTCCGACTCAGCGGCCTCCGCCTCGCCGTCTCGGGCGTCCTTTCGCCGCCTTCGCACGgtgatctcacctagctttctgtcgctgccacacacacacacccttccttcctcccttctatcaagctcagctgtttgtatactgcattcatcaaaacaat...
species | Zea mays |
transcript | GRMZM2G379002_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGCGGCCTCCGCCTCGCCGTCTCGGGCGTCCTTTCGCCGCCTTCGCACG GTCGCAGTCGTATCGATTTGGGAACCCCTGCCCCACCCACCACTGCGGGCTEST: gi|211302439|gb|FL244045.1|FL244045
genomic: CAGCGGCCTCCGCCTCGCCGTCTCGGGCGTCCTTTCGCCGCCTTCGCACGgtgatctcac ... tgaactgcagGTCGCAGTCGTATCGATTTGGGAACCCCTGCCCCACCCACCACTGCGGGCT
EST: CGGCGGCCTCCGCCTCGCCGTCTCGGGCGTCCTTTCGCCGCCTTCACACG GTCGCAGTCGTATCGATTTGGGAACCCCTGCCCCACCCACCACTGCGGGCTEST: gi|149082829|gb|EE172054.2|EE172054
genomic: CAGCGGCCTCCGCCTCGCCGTCTCGGGCGTCCTTTCGCCGCCTTCGCACGgtgatctcac ... tgaactgcagGTCGCAGTCGTATCGATTTGGGAACCCCTGCCCCACCCACCACTGCGGGCT
EST: CAGCGGCCTCCGCCTCGCCGTCTCGGGCGTCCTTTCGCCGCCTTCGCACG GTCGCAGTCGTATCGATTTGGGAACCCCTGCCCCACCCACCACTGCGGGCTEST: gi|74239773|gb|DT647687.1|DT647687
genomic: CAGCGGCCTCCGCCTCGCCGTCTCGGGCGTCCTTTCGCCGCCTTCGCACGgtgatctcac ... tgaactgcagGTCGCAGTCGTATCGATTTGGGAACCCCTGCCCCACCCACCACTGCGGGCT
EST: CAGCGGCCTCCGCCTCGCCGTCTCGGGCGTCCTTTCGCCGCCTTCGCACG GTCGCAGTCGTATCGATTTGGGAACCCCTGCCCCACCCACCACTGCGGGCTEST: gi|148939653|gb|EC884307.2|EC884307
genomic: CAGCGGCCTCCGCCTCGCCGTCTCGGGCGTCCTTTCGCCGCCTTCGCACGgtgatctcac ... tgaactgcagGTCGCAGTCGTATCGATTTGGGAACCCCTGCCCCACCCACCACTGCGGGCT
EST: CAGCGGCCTCCGCCTCGCCGTCTCGGGCGTCCTTTCGCCGCCTTCGCACG GTCGCAGTCGTATCGATTTGGGAACCCCTGCCCCACCCACCACTGCGGGCTEST: gi|71769099|gb|DR967036.1|DR967036
genomic: CAGCGGCCTCCGCCTCGCCGTCTCGGGCGTCCTTTCGCCGCCTTCGCACGgtgatctcac ... tgaactgcagGTCGCAGTCGTATCGATTTGGGAACCCCTGCCCCACCCACCACTGCGGGCT
EST: CAGCGGCCTCCGCCTCGCCGTCTCGGGCGTCCTTTCGCCGCCTTCGCACG GTCGCAGTCGTATCGATTTGGGAACCCCTGCCCCACCCACCACTGCGGGCTEST: gi|211300314|gb|FL244043.1|FL244043
genomic: CAGCGGCCTCCGCCTCGCCGTCTCGGGCGTCCTTTCGCCGCCTTCGCACGgtgatctcac ... tgaactgcagGTCGCAGTCGTATCGATTTGGGAACCCCTGCCCCACCCACCACTGCGGGCT
EST: CGGCGGCCTCCGCCTCGCCGTCTCGGGCGTCCTTTCGCCGCCTTCACACG GTCGCAGTCGTATCGATTTGGGAACCCCTGCCCCACCCACCACTGCGGGCT
genomic: CAGCGGCCTCCGCCTCGCCGTCTCGGGCGTCCTTTCGCCGCCTTCGCACGgtgatctcac ... tgaactgcagGTCGCAGTCGTATCGATTTGGGAACCCCTGCCCCACCCACCACTGCGGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGGGAAGGTCGATGGCGACGTGTTCTCGCCCGCTCTTCGTCTCCGACTCAGCGGCCTCCGCCTCGCCGTCTCGGGCGTCCTTTCGCCGCCTTCGCACGgtgatctcacctagctttctgtcgctgccacacacacacacccttccttcctcccttctatcaagctcagctgtttgtatactgcattcatcaaaacaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaacaa