1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAAGCAGTTCAGGGAGACAGAGGAGATGAAGGCAAAGGCACAGATCTCTCATGCCCAGCCAGATGATCTTATTGATTTTTACCACCTGAAGAGCAGGAAGgtaagaaaaattgctttcttgttgatttttcacttatagaaaagccaagattgtctttgctgaatctatttgttgatatcatcagagctctgaagtaaat...
species | Zea mays |
transcript | GRMZM2G378906_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATGCCCAGCCAGATGATCTTATTGATTTTTACCACCTGAAGAGCAGGAAG GGCATGAGCCAGCTTGAGTTGGAAGATGAGGTGCACGATGATTTGAAGGCTEST: gi|18649756|gb|BM498575.1|BM498575
genomic: ATGCCCAGCCAGATGATCTTATTGATTTTTACCACCTGAAGAGCAGGAAGgtaagaaaaa ... gttatcatagGGCATGAGCCAGCTTGAGTTGGAAGATGAGGTGCACGATGATTTGAAGGCT
EST: ATGCCCAGCCAGATGATCTTATTGATTTTTACCACCTGAAGAGCAGGAAG GGCATGAGCCAGCTTGAGTTGGAAGATGAGGTGCACGATGATTTGAAGGCTEST: gi|160481334|gb|EY254268.1|EY254268
genomic: ATGCCCAGCCAGATGATCTTATTGATTTTTACCACCTGAAGAGCAGGAAGgtaagaaaaa ... gttatcatagGGCATGAGCCAGCTTGAGTTGGAAGATGAGGTGCACGATGATTTGAAGGCT
EST: ATGCCCAGCCAGATGATCTTATTGATTTTTACCACCTGAAGAGCAGGAAG GGCATGAGCCAGCTTGAGTTGGAAGATGAGGTGCACGATGATTTGAAGGCTEST: gi|91054946|gb|EB165364.1|EB165364
genomic: ATGCCCAGCCAGATGATCTTATTGATTTTTACCACCTGAAGAGCAGGAAGgtaagaaaaa ... gttatcatagGGCATGAGCCAGCTTGAGTTGGAAGATGAGGTGCACGATGATTTGAAGGCT
EST: CCTGAAGAGCAGGAAG GGCATGAGCCAGCTTGAGTTGGAAGATGAGGTGCACGATGATTTGAAGGCT
genomic: CCTGAAGAGCAGGAAGgtaagaaaaa ... gttatcatagGGCATGAGCCAGCTTGAGTTGGAAGATGAGGTGCACGATGATTTGAAGGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCAGTTCAGGGAGACAGAGGAGATGAAGGCAAAGGCACAGATCTCTCATGCCCAGCCAGATGATCTTATTGATTTTTACCACCTGAAGAGCAGGAAGgtaagaaaaattgctttcttgttgatttttcacttatagaaaagccaagattgtctttgctgaatctatttgttgatatcatcagagctctgaagtaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagtaaa