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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTCCTCTCCGCGGCGCCCCCTCCTTTTTCCACCCGCCGTCGGCGCAGCCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaactcccttcctctctccccaccatttcgcccctaatctgaactacacgccgcgtgtccag

Basic information

species Zea mays
transcript GRMZM2G377609_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78111205|gb|DV529602.1|DV529602
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|211448707|gb|FL094691.1|FL094691
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|211448706|gb|FL094690.1|FL094690
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|211446589|gb|FL094685.1|FL094685
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|31360028|gb|CD444385.1|CD444385
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|211448705|gb|FL094689.1|FL094689
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|31358130|gb|CD442487.1|CD442487
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|211446588|gb|FL094684.1|FL094684
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|211446592|gb|FL094688.1|FL094688
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
EST: gi|211446590|gb|FL094686.1|FL094686
EST:     CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGG                         AGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC
genomic: CCGCCTTCCTGCCATTTCCGCATCCCTTTCGCCGTCCCCTTCCTCTTCGGgtaaacccaa ... gcgtgtccagAGGAGCCGCTGCTGGTGCGCGCGGCGCGGGGCGAGGACGGCCTCCCACGCC