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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCCTTTGTCGTCGCGCACAAGAAGGTTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccgccgctcccccgcagcccccacccccgatccggtttgttgttaatagtagtttccgccgatctggtttgttgctcgtagtagtttcgcttg...

Basic information

species Zea mays
transcript GRMZM2G376727_T05
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G376727_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g01307.2 (Oryza sativa), 5'ss of exon 1
--------------------------------------------------------------------------CGCCCTTTGTCGTCGCGCACAAGAAGGTTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtac-cgccgctcccccgcagcccccacccccgatccggtttgttgttaatagtagtttccgccgatctggtttgttgctcgtagtagtttcgcttg
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ATCGACCATGGCGATGGCGCGATCCATCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCTCCGCCTCCGCCGACGCGCCCTTCCTCGTCGCGCACAAGAAGgtttcgctctcccgccccaagcctggcgtcgagcgcctcgccgtctccctcgacctctacaaccagggatccgcgtaactactctcctctcctcctcctc---------------------------------------------------------------------------

upper sequence: GRMZM2G376727_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g01307.1 (Oryza sativa), 5'ss of exon 1
CGCCCTTTGTCGTCGCGCACAAGAAGGTTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtac-cgccgctcccccgcagcccccacccccgatccggtttgttgttaatagtagtttccgccgatctggtttgttgctcgtagtagtttcgcttg-
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CGCCCTTCCTCGTCGCGCACAAGAAGGTTTCGCTCTCCCGCCCCAAGCCTGGCGTCGAGCGCCTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtaactactctcctctcctcctcctcctcctcctccgatctctcctctcctc--tcctcgttgttgcaagggaacttcacttgtctttttcttctcggatct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15590113|gb|BI674729.1|BI674729
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: gi|211354951|gb|FL243591.1|FL243591
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT