Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCCTTTGTCGTCGCGCACAAGAAGGTTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccgccgctcccccgcagcccccacccccgatccggtttgttgttaatagtagtttccgccgatctggtttgttgctcgtagtagtttcgcttg...

Basic information

species Zea mays
transcript GRMZM2G376727_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G376727_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g01307.2 (Oryza sativa), 5'ss of exon 1
--------------------------------------------------------------------------CGCCCTTTGTCGTCGCGCACAAGAAGGTTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtac-cgccgctcccccgcagcccccacccccgatccggtttgttgttaatagtagtttccgccgatctggtttgttgctcgtagtagtttcgcttg
                                                                          |||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| | || |||| || |  |                                                                           
ATCGACCATGGCGATGGCGCGATCCATCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCTCCGCCTCCGCCGACGCGCCCTTCCTCGTCGCGCACAAGAAGgtttcgctctcccgccccaagcctggcgtcgagcgcctcgccgtctccctcgacctctacaaccagggatccgcgtaactactctcctctcctcctcctc---------------------------------------------------------------------------

upper sequence: GRMZM2G376727_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g01307.1 (Oryza sativa), 5'ss of exon 1
CGCCCTTTGTCGTCGCGCACAAGAAGGTTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtac-cgccgctcccccgcagcccccacccccgatccggtttgttgttaatagtagtttccgccgatctggtttgttgctcgtagtagtttcgcttg-
|||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| | || |||| || |  || || || ||||||     | |  |   |  | |||   ||        ||   |  || |  |  | |||  |  
CGCCCTTCCTCGTCGCGCACAAGAAGGTTTCGCTCTCCCGCCCCAAGCCTGGCGTCGAGCGCCTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtaactactctcctctcctcctcctcctcctcctccgatctctcctctcctc--tcctcgttgttgcaagggaacttcacttgtctttttcttctcggatct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21987232|gb|BQ778760.1|BQ778760
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: gi|211354951|gb|FL243591.1|FL243591
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: gi|9255123|gb|BE345591.1|BE345591
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGATCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: gi|60354184|gb|DN221157.1|DN221157
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: gi|15590113|gb|BI674729.1|BI674729
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: gi|149106143|gb|EE291820.2|EE291820
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: gi|24765720|gb|CA400879.1|CA400879
EST:     ACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: ACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: gi|30706031|gb|CD059006.1|CD059006
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: gi|60355754|gb|DN222727.1|DN222727
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: gi|78107599|gb|DV526017.1|DV526017
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: gi|78080233|gb|DV508645.1|DV508645
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: gi|211379488|gb|FL165247.1|FL165247
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: gi|74243940|gb|DT651854.1|DT651854
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: gi|211130311|gb|FL066378.1|FL066378
EST:     AACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: AACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: gi|16919381|gb|BM074163.1|BM074163
EST:     CCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: CCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
EST: gi|60347158|gb|DN214131.1|DN214131
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT
genomic: GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagtaccg ... cctattgcagGACTGCCTATGATGTGTCACTTAATGACGACTCTTGGCCAACACAAGCATT