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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATTCGTGATGCGGAGAACAGCTACCGCCGCCCTCGTCCTCGTCCCCCTCCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACGgtaggattctcctctcctctcctctcccaggcagcaacaagctggataatagtggatattatatgattctatctatcctgctgacggattgaaactggaaccgtggcag

Basic information

species Zea mays
transcript GRMZM2G374779_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211340859|gb|FL372915.1|FL372915
EST:     CTCGCTGCGGCGGTTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACG                         GGATTGGGGACCAGTGCGCCAACCATGGCGTTGCCAAGTTCACTAAACTTC
genomic: CTCGCTGCGGCGG-TACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACGgtaggattct ... accgtggcagGGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTC
EST: gi|211357926|gb|FL387018.1|FL387018
EST:     CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACG                         GGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTC
genomic: CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACGgtaggattct ... accgtggcagGGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTC
EST: gi|211458917|gb|FL402420.1|FL402420
EST:     CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACG                         GGATTGGGGACCAGTGCGCCAACCATGGCGTTGCCAAGTTCACTAAACTTC
genomic: CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACGgtaggattct ... accgtggcagGGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTC
EST: gi|211319230|gb|FL384888.1|FL384888
EST:     CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACG                         GGATTGGGGACCAGTGCGCCAACCATGGCGTTGCCAAGTTCACTAAACTTC
genomic: CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACGgtaggattct ... accgtggcagGGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTC
EST: gi|101397865|gb|EB820809.1|EB820809
EST:     CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCGCG                         GGATTGGGGACCAGTGCGTCCACCATGGCGTTGCCGAGTTCACTAAACTTC
genomic: CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACGgtaggattct ... accgtggcagGGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTC
EST: gi|211298857|gb|FL392428.1|FL392428
EST:     CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACG                         GGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTC
genomic: CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACGgtaggattct ... accgtggcagGGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTC
EST: gi|211158456|gb|FL415219.1|FL415219
EST:     CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACG                         GGATTGGGGACCAGTGCGCCAACCATGGCGTTGCCAAGTTCACTAAACTTC
genomic: CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACGgtaggattct ... accgtggcagGGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTC
EST: gi|211533538|gb|FL409967.1|FL409967
EST:     CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACG                         GGATTGGGGACCAGTGCGCCAACCATGGCGTTGCCAAGTTCACTAAACTTC
genomic: CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACGgtaggattct ... accgtggcagGGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTC
EST: gi|211487556|gb|FL382361.1|FL382361
EST:     CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACG                         GGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTC
genomic: CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACGgtaggattct ... accgtggcagGGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTC
EST: gi|211530844|gb|FL420796.1|FL420796
EST:     CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACG                         GGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTC
genomic: CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACGgtaggattct ... accgtggcagGGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTC
EST: gi|32868245|gb|CF007927.1|CF007927
EST:     CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACG                         GGATTGGGGACCAGTGCGCCAACCATGGCGTTGCCAAGTTCACTAAACTTC
genomic: CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACGgtaggattct ... accgtggcagGGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTC
EST: gi|211504683|gb|FL413307.1|FL413307
EST:     CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACG                         GGATTGGGGACCAGTGCGCCAACCATGGCGTTGCCAAGTTCACTAAACTTC
genomic: CCTCGCTGCGGCGGTACAGACCTCCGCCCTGCCTTTCATCGTCCTGCACGgtaggattct ... accgtggcagGGATTGGGGACCAGTGCGTCAACCATGGCGTTGCCAAGTTCACTAAACTTC