Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGTGACGGTGCGGCTAACCAGGGACAGCTCTTTGAGGCTCTCAACATTTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgtgcatcaattccgggaatcggggttggattgagataaatctgattacattatgacaaatataacgtggtctgggtttgattcttttgtatag

Basic information

species Zea mays
transcript GRMZM2G361693_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G361693_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g50620.1 (Oryza sativa), 5'ss of exon 1
TATGGTGACGGTGCGGCTAACCAGGGACAGCTCTTTGAGGCTCTCAACATTTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgtgcatcaattccgggaatcggggttggattgagataaatctgattacattatgacaaatataacgtggtctgggtttgatt-cttttgtatag
|||||||| ||||| || |||||||| |||||||||||||| ||||| || ||||| || ||||||||||| || |||||||||||||| |||||||||||||||||| ||   |  ||  |||||||  | ||| || | ||||  |||| ||   | ||     || | |  || ||| | || |||| |  ||||  ||
TATGGTGATGGTGCCGCGAACCAGGGCCAGCTCTTTGAGGCCCTCAATATATCGGCTCTTTGGAAGCTGCCAGCTATATTGGTCTGCGAAAACAACCATTgtgagttcctgtgccgcttttgggaatcatgattgcatcgtgata--tctgcttgt-tcat--ttgatgtgatatgatcttgattcgatttcccttgtgcag

upper sequence: GRMZM2G361693_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S47_1V6.1 (Physcomitrella patens), 5'ss of exon 1
TATGGTGACGGTGCGGCTAACCAGGGACAGCTCTTTGAGGCTCTCAACATTTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagtt--cgtgcatcaattccgggaatcggggttggattgagataaatctgattacattatgacaaatataacgtggtctgggtttgattcttttgtatag
||||| || || || || || ||||| ||| | || |||||  | ||||| || || || ||||| ||||| |  || |  ||||||||||||||||||||||||||  |||   |   |  |   |||   | | |  |  |  | ||| ||||  |  | ||   ||| |  | ||   | |   ||| ||  ||   |  
TATGGAGATGGCGCTGCCAATCAGGGGCAGTTATTCGAGGCGATGAACATCTCAGCACTTTGGAATCTGCCGGTTATCTATGTCTGCGAGAACAACCATTgtgagttgtcgttgttgtgtagccctaattttgat-gcgtgaaagttaat-tgatccctgtctgctgaat-tgtcttgcaattgcaatgaatccgttccttct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78079977|gb|DV508389.1|DV508389
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|71419912|gb|DR804938.1|DR804938
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|76285908|gb|DV025476.1|DV025476
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|67014415|gb|CO443164.1|CO443164
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCANAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|76925282|gb|DV170361.1|DV170361
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|22819342|gb|BU499432.1|BU499432
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|76021452|gb|DT948622.1|DT948622
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACACCCATT                         ATGGGATGGAAACAGCGGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACT
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGG-AGTGGAGGGCAGCAAAGAGCCCTGCCTACT
EST: gi|78106233|gb|DV524651.1|DV524651
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|60348121|gb|DN215094.1|DN215094
EST:     CTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: CTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|26558514|gb|CA830749.1|CA830749
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|22546228|gb|BU098539.1|BU098539
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAAGCCCTGCCTACTAC
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGA-GCCCTGCCTACTAC
EST: gi|76925284|gb|DV170362.1|DV170362
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACCACCATT                         ATGGGATGGGAACAGCGGAGTGCAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|74233522|gb|DT641436.1|DT641436
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|21809856|gb|BQ668174.1|BQ668174
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|74233521|gb|DT641435.1|DT641435
EST:     TTCGACCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|22472806|gb|BU037286.1|BU037286
EST:     CGGCCCTCTGGAAGCTGCCTGCCATATTGGGTCGGCGAGAAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: CGGCCCTCTGGAAGCTGCCTGCCATATT-GGTCTGCGAG-AACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|76285909|gb|DV025477.1|DV025477
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGGCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|149074057|gb|EE162397.2|EE162397
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAG
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAG
EST: gi|71756697|gb|DR954634.1|DR954634
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACGACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|87156670|gb|DY401459.1|DY401459
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|71325764|gb|DR799563.1|DR799563
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|74235162|gb|DT643076.1|DT643076
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTNAC
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACT-AC
EST: gi|31353100|gb|CD437457.1|CD437457
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|71312004|gb|DR792518.1|DR792518
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGA
EST: gi|31356997|gb|CD441354.1|CD441354
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|71757741|gb|DR955678.1|DR955678
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|71770430|gb|DR968367.1|DR968367
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|50322897|gb|CO518023.1|CO518023
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGG
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGG
EST: gi|148973383|gb|EE024474.2|EE024474
EST:     TCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAAACA-CCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTA
genomic: TCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAA-CAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTA
EST: gi|74235161|gb|DT643075.1|DT643075
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATGGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|71430301|gb|DR811351.1|DR811351
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|71419909|gb|DR804937.1|DR804937
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|71323254|gb|DR798281.1|DR798281
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACCACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|149087227|gb|EE176765.2|EE176765
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|76018761|gb|DT945931.1|DT945931
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|71432518|gb|DR813568.1|DR813568
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGAAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|149005249|gb|EE039796.2|EE039796
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGCCTGCGAGAACA-CCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAAGCC-TGCCTACTAC
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGA-GCCCTGCCTACTAC
EST: gi|149005248|gb|EE039795.2|EE039795
EST:     AGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTATTACA
genomic: AGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|148967926|gb|EE019236.2|EE019236
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|71765003|gb|DR962940.1|DR962940
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|76018172|gb|DT945342.1|DT945342
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAAC-ATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|78076521|gb|DV504955.1|DV504955
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|71438577|gb|DR819627.1|DR819627
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|94474454|gb|EB703412.1|EB703412
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
EST: gi|31356163|gb|CD440520.1|CD440520
EST:     TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATT                         ATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA
genomic: TTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 41 (upstream exon), 49 (downstream exon)
Score: 99

TATGGTGACGGTGCGGCTAACCAGGGACAGCTCTTTGAGGCTCTCAACATTTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAAGCGTGGCGACTATGTGCCTGGATTGAAG


Block sizes: 48 (upstream exon), 45 (downstream exon)
Score: 98

TATGGTGACGGTGCGGCTAACCAGGGACAGCTCTTTGAGGCTCTCAACATTTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAAGCGTGGCGACTATGTGCCTGGATTGAAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 72

TATGGTGACGGTGCGGCTAACCAGGGACAGCTCTTTGAGGCTCTCAACATTTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAAGCGTGGCGACTATGTGCCTGGATTGAAG


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 150

TATGGTGACGGTGCGGCTAACCAGGGACAGCTCTTTGAGGCTCTCAACATTTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgt ... ttttgtatagATGGGATGGGAACAGCGGAGTGGAGGGCAGCAAAGAGCCCTGCCTACTACAAGCGTGGCGACTATGTGCCTGGATTGAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATGGTGACGGTGCGGCTAACCAGGGACAGCTCTTTGAGGCTCTCAACATTTCGGCCCTCTGGAAGCTGCCTGCCATATTGGTCTGCGAGAACAACCATTgtgagttcgtgcatcaattccgggaatcggggttggattgagataaatctgattacattatgacaaatataacgtggtctgggtttgattcttttgtatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC