Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGCGTCGTCGTGCCCCCGGCCCCTGCCGCCGCCGCCGCGAAGAAGGCCAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgcatcgcgccatcgccacatggctctcgccctctgtgtttttttaattatatattttctcttgaattcgtgcgatttgacttggtttcggcctcgttttttgcgcccgcag

Basic information

species Zea mays
transcript GRMZM2G361074_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G361074_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g47870.1 (Oryza sativa), 5'ss of exon 1
GGCAGCGTCGTCGT--GCCCCCGGCCCCTGCCGCCGCCGCCGCGAAGAAGGCCAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgt--gcgtacgcatcgcgccatcgccacatggctctcgccctctgtgtttttttaattatatattttctcttgaattcgtgcgattt-gacttggttt-cggcctcgttttttgcgcccgcag
 || | | |  | |    | ||||| ||| || || |||  || ||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||  |||| ||| || |||   ||||  ||||| | |||     |   || ||   ||     | | |    ||  |  |||||||  | |  ||||| |  | || | || | | |  ||||
-GCCGTGCCCCCCTCCATCGCCGGCGCCT-CCTCCTCCGGGGCCAAGAAGGGCAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTCTCCCTCTGGGCCTGGGgtaagcgtccgcgtc-cgcgtccgccg-atggcgcccgcgtctcgc--ttgttggctttctcgtgtgc----gatctgatgcgattccgtcgcggttttcttcttcttcttcttctcgtgcag

upper sequence: GRMZM2G361074_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA12G32060.4 (Glycine max), 5'ss of exon 1
GGCAGCGTCGTCGTGCCCCCGGCCCCTGCCGCCGCCGCCGCGAAGAAGGCCAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgcatcgcgccatcgccacatggctctcgccctctgtgtttttttaattatatattttctcttgaattcgtgcgatttgacttggtttcggcctcgttttttgcgcccgcag
| | |||  | |     |   |||  | |  |  |  || | |||||| | ||||| |||||||||||||||||||| || || || |||||||| ||||||||||     || |  | |   | ||   | ||     ||| |  |||| |   | |  ||||  | ||   |   |||                                       
GCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGAGATCAAGAAGTGGAATGCGGTTTCCCTCTGGGCTTGGGgtgcgtctc--tctcaacgttttccca-aaccctaattttcttttcttttctttcttttaatttattattctttctttgcag-------------------------------------

upper sequence: GRMZM2G361074_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ06425 (Selaginella moellendorffii), 5'ss of exon 1
GGCAGCGTCGTCGTGCCCCCG-GCCCCTGCCGCCGCCGCCGCGAAGAAGGCCAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgt--gcgtacgcatcgcgccatcgccacatggctctcgccctctgtgtttttttaattatatattttctcttgaattcgtgcgatttgacttggtttcggcctcgttttttgcgcccgcag
  || ||     | || || |   |   ||      | |||| |||    | ||||||||||||||||||||||||||||| ||  | || ||||| ||||||  | | |    | ||    |       |  |  |||| | || |  || |  |                                                                  
-CCATCGGGCGAGGGCTCCAGCAGCGGCGCGAGTAGCTCCGCCAAGCGCTCTAAGCGCTTCGAGATCAAGAAGTGGAACGCTGTGGCGCTTTGGGCATGGGgtaaggggattgtttgcattgtgagagattatcgatcgcgccctct--ttctccag-----------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211305107|gb|FL162112.1|FL162112
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|71426824|gb|DR807874.1|DR807874
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211307131|gb|FL162129.1|FL162129
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|78085341|gb|DV513734.1|DV513734
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|148950950|gb|EC896587.2|EC896587
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211307122|gb|FL162120.1|FL162120
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211196752|gb|FL162102.1|FL162102
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|84979967|gb|DW530316.1|DW530316
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|33770787|gb|CF273081.1|CF273081
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|28187952|gb|CB179562.1|CB179562
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTCT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211305102|gb|FL162107.1|FL162107
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211309155|gb|FL162139.1|FL162139
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|116823511|gb|EC867051.1|EC867051
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211307127|gb|FL162125.1|FL162125
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211305104|gb|FL162109.1|FL162109
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211305105|gb|FL162110.1|FL162110
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211307126|gb|FL162124.1|FL162124
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|76294370|gb|DV033938.1|DV033938
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211307136|gb|FL162134.1|FL162134
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|28188123|gb|CB179733.1|CB179733
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|71426825|gb|DR807875.1|DR807875
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|32912934|gb|CF017746.1|CF017746
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211307124|gb|FL162122.1|FL162122
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|149085569|gb|EE175081.2|EE175081
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|78081690|gb|DV510102.1|DV510102
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211309154|gb|FL162138.1|FL162138
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211305110|gb|FL162115.1|FL162115
EST:     CAAGCGCTWCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211305106|gb|FL162111.1|FL162111
EST:     CAAGCGCTTCGATATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211307132|gb|FL162130.1|FL162130
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211305100|gb|FL162105.1|FL162105
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211309153|gb|FL162137.1|FL162137
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211196753|gb|FL162103.1|FL162103
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|76908744|gb|DV163077.1|DV163077
EST:     ACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: ACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|37622025|gb|CF675078.1|CF675078
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|28187964|gb|CB179574.1|CB179574
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAGCTGCGCCATCTGCCGCGACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211305109|gb|FL162114.1|FL162114
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211307128|gb|FL162126.1|FL162126
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211307135|gb|FL162133.1|FL162133
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211305101|gb|FL162106.1|FL162106
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATTGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|28188239|gb|CB179849.1|CB179849
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211307123|gb|FL162121.1|FL162121
EST:     CAAGCGCTTCGAGWTCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|161591204|gb|EY959415.1|EY959415
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGC
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGC
EST: gi|32915004|gb|CF019816.1|CF019816
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|101389549|gb|EB816709.1|EB816709
EST:     GAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: GAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211309151|gb|FL162135.1|FL162135
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|60395946|gb|DN228816.1|DN228816
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|4827489|gb|AI668181.1|AI668181
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211305113|gb|FL162118.1|FL162118
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211307133|gb|FL162131.1|FL162131
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|9952798|gb|BE639381.1|BE639381
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211307129|gb|FL162127.1|FL162127
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|78026763|gb|DV495150.1|DV495150
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211305114|gb|FL162119.1|FL162119
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGSCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211305112|gb|FL162117.1|FL162117
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211309152|gb|FL162136.1|FL162136
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|37375689|gb|CF624299.1|CF624299
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
EST: gi|211305111|gb|FL162116.1|FL162116
EST:     CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGG                         ACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT
genomic: CAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 362

GGCAGCGTCGTCGTGCCCCCGGCCCCTGCCGCCGCCGCCGCGAAGAAGGCCAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT


Block sizes: 44 (upstream exon), 47 (downstream exon)
Score: 101

GGCAGCGTCGTCGTGCCCCCGGCCCCTGCCGCCGCCGCCGCGAAGAAGGCCAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 77

GGCAGCGTCGTCGTGCCCCCGGCCCCTGCCGCCGCCGCCGCGAAGAAGGCCAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT


Block sizes: 46 (upstream exon), 47 (downstream exon)
Score: 186

GGCAGCGTCGTCGTGCCCCCGGCCCCTGCCGCCGCCGCCGCGAAGAAGGCCAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgc ... gcgcccgcagACATCGTGGTGGACAACTGCGCCATCTGCCGCAACCACATCATGGACCTTT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCAGCGTCGTCGTGCCCCCGGCCCCTGCCGCCGCCGCCGCGAAGAAGGCCAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCTCTCTCTGGGCCTGGGgtgcgtacgcatcgcgccatcgccacatggctctcgccctctgtgtttttttaattatatattttctcttgaattcgtgcgatttgacttggtttcggcctcgttttttgcgcccgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA