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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCTCCTCCAGCTGTTCGATAACTCCTGGGAGCCCATTGAGGACGAGTGCTACCGCGCCCTCGCCGATGCTATCCTCGAAGCCCGCGACCGGCCCCAGgtattccccttcgtccactcttcatacccaaatgtaatgggcgaagatgatttgccttcttttgtttttttactgataacctaccgatgatggggagcag

Basic information

species Zea mays
transcript GRMZM2G357972_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G357972_T02 (Zea mays), 5'ss of exon 1
lower sequence: 13113.m00156 (Oryza sativa), 5'ss of exon 1
---------GAACCTCCTCCAGCTGTTCGATAACTCCTGGGAGCCCATTGAGGACGAGTGCTACCGCGCCCTCGCCGATGCTATCCTCGAAGCCCGCGACCGGCCCCAGgtattccccttcgtccactcttcatacccaaatgtaatgggcgaagatgatttgccttcttttgtttttttactgataacctaccgatgatggggagcag
         ||||||||||  ||| ||||  |||  |||||||||||| ||||||||||||||||||||||||||||| || ||||||||         ||| | |||||| | ||   ||| | |  |      |     | |  | ||   | ||  || |  |    ||  ||     |||     || | |              
TGTCCTCAAGAACCTCCTCAGGCTCTTCGGCAACAACTGGGAGCCCATCGAGGACGAGTGCTACCGCGCCCTCGCCGACGCCATCCTCGA---------CCGCCACCAGgtgt-ccttgtcgccaaagccctcctctt---tttttttggtttacat--ttcgattcgacttacttagccgctggggttcttcag--------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50338840|gb|CO533966.1|CO533966
EST:     GCTACCGCGCCCTCGCCGATGCTATCCTCGAAGCCCGCGACCGGCCCCAG                         ATGCATTGCAGCAACAGTACAAGAGGGGTTCGGCTTCCGCCGGAGGGGGAG
genomic: GCTACCGCGCCCTCGCCGATGCTATCCTCGAAGCCCGCGACCGGCCCCAGgtattcccct ... tggggagcagATGCATTGCAGCAACAGTACAAGAGGGGTTCGGCTTCCGCCGGAGGGGGAG
EST: gi|211354036|gb|FL428925.1|FL428925
EST:     GCTACCGCGCCCTCGCCGATGCTATCCTCGAAGCCCGCGACCGGCCCCAG                         ATGCATTGCAGCAACAGTACAAGAGGGGTTCGGCTTCCGCCGGAGGGGGAG
genomic: GCTACCGCGCCCTCGCCGATGCTATCCTCGAAGCCCGCGACCGGCCCCAGgtattcccct ... tggggagcagATGCATTGCAGCAACAGTACAAGAGGGGTTCGGCTTCCGCCGGAGGGGGAG
EST: gi|78091875|gb|DV520249.1|DV520249
EST:     GCTACCGCGCCCTCGCCGATGCTATCCTCGAAGCCCGCGACCGGCCCCAG                         ATGCATTGCAGCAACAGTACAAGAGGGGTTCGGCTTCCGCCGGAGGGGGAG
genomic: GCTACCGCGCCCTCGCCGATGCTATCCTCGAAGCCCGCGACCGGCCCCAGgtattcccct ... tggggagcagATGCATTGCAGCAACAGTACAAGAGGGGTTCGGCTTCCGCCGGAGGGGGAG
EST: gi|31360546|gb|CD444903.1|CD444903
EST:     GCTACCGCGCCCTCGCCGATGCTATCCTCGAAGCCCGCGACCGGCCCCAG                         ATGCATTGCAGCAACAGTACAAGAGGGGTTCGGCTTCCGCCGGAGGGGGAG
genomic: GCTACCGCGCCCTCGCCGATGCTATCCTCGAAGCCCGCGACCGGCCCCAGgtattcccct ... tggggagcagATGCATTGCAGCAACAGTACAAGAGGGGTTCGGCTTCCGCCGGAGGGGGAG