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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGACCTCCTGGCACTGGAAAAACTATGCTTGCCAAAGCAGTAGCAACTGAAGCAGGCGCTAATTTCATCAATATATCAATGTCGAGCATTACATCTAAGgtattatttcacctaatgggcaactgatgagattcactactgtctcaag

Basic information

species Zea mays
transcript GRMZM2G354532_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G354532_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g43970.1 (Oryza sativa), 5'ss of exon 22
CGGACCTCCTGGCACTGGAAAAACTATGCTTGCCAAAGCAGTAGCAACTGAAGCAGGCGCTAATTTCATCAATATATCAATGTCGAGCATTACATCTAAGgtattatttcacctaatgggca-actgatgagattcactactgtctcaag--------------------------------------
 ||||||||||| ||||| ||||| |||||||| || |||||||||||||||||||| ||||| ||||| || ||||||||||| ||||||||||| ||||||| ||  || | ||       | | ||||| |  || | |||   | |                                      
TGGACCTCCTGGTACTGGGAAAACCATGCTTGCTAAGGCAGTAGCAACTGAAGCAGGTGCTAACTTCATTAACATATCAATGTCAAGCATTACATCGAAGgtatgatggcatccaaattttgcattaatgaggtgtac-agtgtactatgtgattctcaaagctaaatgctgttttttctactttcag

upper sequence: GRMZM2G354532_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 21
CGGACCTCCTGGCACTGGAAAAACTATGCTTGCCAAAGCAGTAGCAACTGAAGCAGGCGCTAATTTCATCAATATATCAATGTCGAGCATTACATCTAAGgtattatttcacctaatgggcaactgatgagattcactactgtctcaag-------------------------------------
 || || |||||||| |||||||| |||||||| || || |||||||||||||| || || |||||||| || || |||||||| |||||||| || ||||||||| |      | |       |  || | |  | | |  | |                                         
TGGGCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCAAAGgtattaatgttgtaagttacttttttttgtggtgtatttccttgtatgcttcagtgacaagaaaaatatggttttgtttgttgcag

upper sequence: GRMZM2G354532_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA17G13850.1 (Glycine max), 5'ss of exon 20
CGGACCTCCTGGCACTGGAAAAACTATGCTTGCCAAAGCAGTAGCAACTGAAGCAGGCGCTAATTTCATCAATATATCAATGTCGAGCATTACATCTAAGgta----ttatttcacctaatgggca-actgatgaga--ttcactactgtctcaag-----------------------------------
 || || ||||| ||||| ||||| |||||||| || ||| | || |||||||| || ||||| |||||||| || || ||||| || || |||||||||||     || | || |   | | | | | ||||   |  || | || | |     |                                   
TGGTCCCCCTGGAACTGGTAAAACAATGCTTGCAAAGGCAATTGCTACTGAAGCTGGTGCTAACTTCATCAACATTTCTATGTCAAGTATCACATCTAAGgttaaatttgtctctctctaagtgtatattgatttcacctttattagtttgctgtgcatacaactcattttcttgcctctttttgcttcag

upper sequence: GRMZM2G354532_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA02G17400.1 (Glycine max), 5'ss of exon 18
CGGACCTCCTGGCACTGGAAAAACTATGCTTGCCAAAGCAGTAGCAACTGAAGCAGGCGCTAATTTCATCAATATATCAATGTCGAGCATTACATCTAAGgtattatttcacctaatgggcaactgatgagattcactactgtctcaag------------------------------------------
 || || |||||||| |||||||| |||||||| || || || ||||||||||| || || ||||| || || || |||||||| ||||||||||| ||||||||| ||   | |||    ||||| |  | |  ||| |||| |                                              
TGGCCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTGGCAACTGAAGCTGGAGCAAATTTTATTAACATTTCAATGTCCAGCATTACATCCAAGgtattagtt--gcaaattta-aactgttttgctctact-ctgtattttcctttcattcattaagtgacaggatattgtttttttgttgcag

upper sequence: GRMZM2G354532_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA02G17410.1 (Glycine max), 5'ss of exon 17
CGGACCTCCTGGCACTGGAAAAACTATGCTTGCCAAAGCAGTAGCAACTGAAGCAGGCGCTAATTTCATCAATATATCAATGTCGAGCATTACATCTAAGgtattatt----tcacctaatgggcaactgatgagattcactac-tgtctcaag-------------------------------
 || || |||||||| |||||||| |||||||| || || |||||||||||||| || || |||||||| || || |||||||| |||||||| || ||||||| | |    | |  || |       |  ||   |||  |   ||  |||                                 
TGGGCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCAAAGgtatcaatattgtaaattactttttttgttgtgtatttccttgtatgcttcagttacaagaaaaacatggttttgtttgttgcag

upper sequence: GRMZM2G354532_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA10G02410.1 (Glycine max), 5'ss of exon 18
CGGACCTCCTGGCACTGGAAAAACTATGCTTGCCAAAGCAGTAGCAACTGAAGCAGGCGCTAATTTCATCAATATATCAATGTCGAGCATTACATCTAAGgtattatttc---acctaa-------tgggcaactgatgagattcactactgtctcaag-------------------------------
 || ||||||||||| |||||||| |||||||| || || |||||||||||||| || || ||||| || || || |||||||| |||||||| || ||||||||| ||    |  |||       ||  | |||  ||   |||  | |  ||  |||                               
TGGCCCTCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTTATTAACATTTCAATGTCCAGCATTACGTCCAAGgtattagttgcaaatttaaacagttttgctctactt-tgtatttcctttcattcataagtgacaggatagatattgtttttttgttgcag

upper sequence: GRMZM2G354532_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT4G02480.1 (Arabidopsis thaliana), 5'ss of exon 21
CGGACCTCCTGGCACTGGAAAAACTATGCTTGCCAAAGCAGTAGCAACTGAAGCAGGCGCTAATTTCATCAATATATCAATGTCGAGCATTACATCTAAGgtattatttcacctaatgggcaactgatgagattcactactgtctcaag--------------------------------------
 ||||||||||| |||||||| || ||||| || ||||||||||||||||| || ||||| |||||||||||||| |||||||| |||||||| || ||||||   | |||   | ||   |  ||||    ||   | || |||                                          
TGGACCTCCTGGTACTGGAAAGACGATGCTGGCAAAAGCAGTAGCAACTGAGGCTGGCGCAAATTTCATCAATATCTCAATGTCCAGCATTACTTCGAAGgtaac-tctcataaagtg---atatgatttccttttatgctttcttttaatgattgtacttgaccatttacactaaatgctttgcag

upper sequence: GRMZM2G354532_T01 (Zea mays), 5'ss of exon 1
lower sequence: AT4G24860.1 (Arabidopsis thaliana), 5'ss of exon 21
CGGACCTCCTGGCACTGGAAAAACTATGCTTGCCAAAGCAGTAGCAACTGAAGCAGGCGCTAATTTCATCAATATATCAATGTCGAGCATTACATCTAAGgtattatttcacctaatgggcaactgatgagattcac-tactgtctcaag--------------------------------
 ||||||||||| |||||||| || |||||||| |||||||| ||||  ||||| |  || || |||||||| || |||||||| ||||| ||||||||||||       ||   |||   |  |     |||| ||  || |  ||                                   
TGGACCTCCTGGAACTGGAAAGACCATGCTTGCAAAAGCAGTGGCAAAGGAAGCTGATGCGAACTTCATCAACATCTCAATGTCAAGCATCACATCTAAGgtaactgaatactctatgaaaagttctaccgatttacacacgggatctttttttcaaacttgtgttcttcttaatactgcag

upper sequence: GRMZM2G354532_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 22
CGGACCTCCTGGCACTGGAAAAACTATGCTTGCCAAAGCAGTAGCAACTGAAGCAGGCGCTAATTTCATCAATATATCAATGTCGAGCATTACATCTAAGgtattatttcacctaatgggcaactgatgagattcactactgtctcaag----------------------------------------------------
 || || ||||| || || || || |||||||| || || || || |||||||| || || || ||||||||||| |||||||| ||||| |||||||||||  |  || |   | | |     |  |   || |  |  | |||  ||                                                    
TGGCCCCCCTGGAACAGGCAAGACAATGCTTGCTAAGGCTGTTGCTACTGAAGCTGGTGCAAACTTCATCAATATTTCAATGTCAAGCATCACATCTAAGgttatcattgata-agtagcttcttttttctatcccttgatctctatagtgggttgttatttttttttttctcagctggtttctcatctttcttgttgcag

upper sequence: GRMZM2G354532_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 21
CGGACCTCCTGGCACTGGAAAAACTATGCTTGCCAAAGCAGTAGCAACTGAAGCAGGCGCTAATTTCATCAATATATCAATGTCGAGCATTACATCTAAGgtat-tattt-cacctaatgggcaactgatgagattcactactgtctcaag-----------------------------------------
 || |||||||| ||||||||||| |||||||| || || || |||||||| ||||| || ||||| ||||| ||||||||||| || || || || ||||||  ||| | || | ||  ||  ||| |||    || ||  ||   ||||                                         
TGGGCCTCCTGGGACTGGAAAAACAATGCTTGCGAAGGCGGTTGCAACTGAGGCAGGTGCAAATTTTATCAACATATCAATGTCTAGTATCACTTCAAAGgtaaatatgtgcatcaaaatggtgact-atgcagctctcttttg---caagtcttgttttgaaaatatttgacatcctgatattgcttgcag