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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGACGCCCGTCGACATCGTGCGGCAGACGCGTGAGTGCCTCGTCCACCTCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAGgtgagatcgggtctgaccctctgtctagggatttcgtggcttcgattccccatttgtgcccgatggttcaaccccgattgcgcgtgaactttacctaatt...

Basic information

species Zea mays
transcript GRMZM2G351417_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G351417_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g39630.1 (Oryza sativa), 5'ss of exon 1
GCGGACGCCCGTCGACATCGTGCGGCAGACGCGTGAGTGCCTCGTCCACCTCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAGgtgagatcgggtctgaccctctgtctagggatttcgtggcttcgattccccatttgtgcccgatggttcaaccccgattgcgcgtgaacttt--acctaatt--
||||||||| |  ||| |||||||||||||||| |||  |||| ||  ||||||||| ||||| || || ||  ||||||||||||||||||| |||||||||||||||     |    | |  ||     ||| |  ||  |    |||    || || |     |||  ||||||| || | |||   |   ||||  ||  
GCGGACGCCGGCAGACGTCGTGCGGCAGACGCGGGAGCTCCTCATCTTCCTCGACCTACACTCCGGATCACGCGGCGGCGACGCCAAGCGCGAGGAGAAGgtgagatcgaacacgcagttgttactgttttttttgctgccccatcccccttgctgcgcaca----ttcgtccccgatcgctcatgagagtggaacctttttac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148990860|gb|EE032278.2|EE032278
EST:     TCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAG                         ATGACGGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
genomic: TCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAGgtgagatcgg ... gtttatgcagATGACGGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: gi|148951718|gb|EC897471.2|EC897471
EST:     TCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAG                         ATGACGGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
genomic: TCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAGgtgagatcgg ... gtttatgcagATGACGGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: gi|5895978|gb|AW037224.1|AW037224
EST:     TCGACCTCCACTCGGGCTCCCGGAGTGGCGACGCCAAGCGCGACGAGAAG                         ATGACGGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTGTACGGC
genomic: TCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAGgtgagatcgg ... gtttatgcagATGACGGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: gi|50339179|gb|CO534305.1|CO534305
EST:     TCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAG                         ATGACGGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
genomic: TCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAGgtgagatcgg ... gtttatgcagATGACGGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: gi|74238607|gb|DT646521.1|DT646521
EST:     TCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAG                         ATGACGGAGCTAAGCAAAA-TATCAGGGATATGAAGTCTATCCTTTACGGC
genomic: TCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAGgtgagatcgg ... gtttatgcagATGACGGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: gi|60352002|gb|DN218975.1|DN218975
EST:     TCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAG                         ATGACGGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
genomic: TCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAGgtgagatcgg ... gtttatgcagATGACGGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: gi|148982842|gb|EE028691.2|EE028691
EST:     TCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAG                         ATGACGGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
genomic: TCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAGgtgagatcgg ... gtttatgcagATGACGGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
EST: gi|149081164|gb|EE170272.2|EE170272
EST:     TCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAG                         ATGACGGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC
genomic: TCGACCTCCACTCGGGCTCCCGGAGCGGCGACGCCAAGCGCGACGAGAAGgtgagatcgg ... gtttatgcagATGACGGAGCTAAGCAAAAATATCAGGGATATGAAGTCTATCCTTTACGGC