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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACGTCGTCGAACCCATTCTCCTAGAGGTCGACCAGATCTACCACCTCGCCTGCCCCGCATCCCCCGTGCACTACAAGTTCAACCCCATCAAAACCATCatatcctccccgctccgctgcccgcgcataattcgtccacatcctcacagaaattggattcgttatatttgtctttattggtttatttatggacacggat...

Basic information

species Zea mays
transcript GRMZM2G347717_T03
intron # 1
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G347717_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g17230.1 (Oryza sativa), 5'ss of exon 1
CGACGTCGTCGAACCCATTCTCCTAGAGGTCGACCAGATCTACCACCTCGCCTGCCCCGCATCCCCCGTGCACTACAAGTTCAACCCCATCAAAACCATCatatcctccccgctccgctgcccgcgcataattcgtccacatcctcacagaaattggattcgttatatttgtctttattggtttatttatg-gacacggat-----
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||  || || |     | || |   |||     |||     | | | |  ||  |   | |  ||| | ||||||  ||  |   | || | ||||     
CGACGTCGTCGAGCCCATCCTCCTCGAGGTCGACCAGATCTACCACCTCGCCTGCCCGGCATCCCCCGTCCACTACAAATTCAACCCCATCAAGACCATCatatcctttccactgcaaactctgctccacattttcgtaca-----aaaaacaaaggcctttgtctgcttg-cattattgaattgctggagtgaaatggatatgag

upper sequence: GRMZM2G347717_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA10G05260.1 (Glycine max), 5'ss of exon 1
CGACGTCGTCGAACCCATTCTCCTAGAGGTCGACCAGATCTACCACCTCGCCTGCCCCGCATCCCCCGTGCACTACAAGTTCAACCCCATCAAAACCATCatatcctccccgctccgctgcccgcgcataattcgtccacatcctcacagaaattggattcgttatatttgtctttattggtttatttatggacacggat--------------------
||||||||| || || |||||  | ||||| || ||||||||||||||||| || ||||| || || ||||||||||| | ||||||| |||| ||||||||||||| ||  |||      |      | | ||| ||   |  | | ||     |   || || |   |   ||| |  ||||  |  || |  | |                      
CGACGTCGTTGAGCCGATTCTGTTGGAGGTTGATCAGATCTACCACCTCGCGTGTCCCGCGTCGCCGGTGCACTACAAATACAACCCCGTCAAGACCATCatatccttcct-ctctatgttctaactctgactcg-ccgtgttttta-agttccagctctcttttttcgtaattttttatgttttgtgttgaattctgtgatccttaattgttggcttac

upper sequence: GRMZM2G347717_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA13G19640.1 (Glycine max), 5'ss of exon 1
CGACGTCGTCGAACCCATTCTCCTAGAGGTCGACCAGATCTACCACCTCGCCTGCCCCGCATCCCCCGTGCACTACAAGTTCAACCCCATCAAAACCATCatatcctcccc-----gctccgctgcccgcgcataattcgtccacatcctcacagaaattggattcgttatatttgtctt-tattggtttatttatggacacggat-----------
||||||||| || || ||||| || ||||| || |||||||| |||||||| || ||||| || || ||||||||||| | ||||||| |||| |||||||||||||   |     | ||     |   | ||   ||  |    |     |   |   |   ||||| || ||| | ||   |||  ||   | ||  |    ||           
CGACGTCGTTGAGCCGATTCTGCTGGAGGTGGATCAGATCTATCACCTCGCGTGTCCCGCGTCGCCGGTGCACTACAAATACAACCCCGTCAAGACCATCatatccttgtctcgatgttctaactctaactcagcgttttttttaagttctaataactcttttttcgtaatttttattttgcgttgagtt--ctgtgatccttaattattagtttac

upper sequence: GRMZM2G347717_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S209_52V6.1 (Physcomitrella patens), 5'ss of exon 1
CGACGTCGTCGAACCCATTCTCCTAGAGGTCGACCAGATCTACCACCTCGCCTGCCCCGCATCCCCCGTGCACTACAAGTTCAACCCCATCAAAACCATCatatcctccccgctccgctgccc-gcgcataattcgtccacatcctcacagaaattggattcgttatatttgtctttattggtttatttatggacacggat-----------------------------------------
||| || || || ||  |  | || ||||| |||||||| || ||||| || || || || || |||||||| |||||||||||||||||||| || ||||||||||      | ||    |  | |  | ||   ||   |  | |   |   ||    |    || | |  | || ||| ||  | ||  ||    | |                                         
CGATGTGGTGGAGCCTTTGTTGCTGGAGGTGGACCAGATTTATCACCTTGCGTGTCCGGCGTCGCCCGTGCATTACAAGTTCAACCCCATCAAGACAATCatatccttttttgtgcgagatcttgtgtgttatgaatctgaaatccccttgcgtttttcctatgaatgtctcacgtt-ttgtttgctgtagagaagatgttttcgattcgtcattcgtgcggcccccttaatcttcctacac

upper sequence: GRMZM2G347717_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S60_124V6.1 (Physcomitrella patens), 5'ss of exon 1
CGACGTCGTCGAACCCATTCTCCTAGAGGTCGACCAGATCTACCACCTCGCCTGCCCCGCATCCCCCGTGCACTACAAGTTCAACCCCATCAAAACCATCatatcctccccgctccgctgcccgcgcataattcgtccacatcctcacagaaattggattc---gttatatttgtctttattggtttatttatggacacggat
||||||||| || ||  |  | || |||||||| |||||||||||||| || ||||| || || || || |||||||||||||||||  |||| || ||||||||||   |   || || ||  |   | ||  |  ||| |  || || ||| ||  |       | |||  |    ||   |||   ||   |    |  |
CGACGTCGTGGAGCCTCTCTTGCTGGAGGTCGATCAGATCTACCACCTTGCTTGCCCTGCCTCACCTGTCCACTACAAGTTCAACCCTGTCAAGACAATCatatccttttccaccctct-cctccagttgat--gatcacgttttcgcacaaaatgcttgtcagactttatcagagcgtagctgttgtgtttctgttgtgcct