Sequence
atgc intronic sequence ATGC exonic sequenceATGATGATTCGTGCCGGTATTCCTACTGTGACAACCGGATATCCAATACCAAGTATACTCTGTGGAATTTTCTCCCGAAAAATTTATGGGAGCAATTCAGgtttgtatctgttcttcacttctcgacaataaagtagttccatctccatctagtcatttcattgcttcagcacctaaggtagttgcactttatccacttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G347447_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g28460.1 (Oryza sativa), 5'ss of exon 1
ATGATGATTCGTGCCGGTATTCCTACTGTGACAACCGGATATCCAATACCAAGTATACTCTGTGGAATTTTCTCCCGAAAAATTTATGGGAGCAATTCAGgtttgtatctgtt--cttcacttctcgacaataaagtagttccatct---ccatctagtcatttcattgcttcagcacctaaggtagttgcactttatccacttt
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ATGATGATTCATGGCAGGATTCCTATTGTGACAATCGAATATCAAATACCAAATATAATCTCTGGAATTTTCTCCCTAAGAACTTATGGGAGCAATTCAGgtttggacttgtttcctgtgctgacctataaatacactttctgatcttggcaaaatggacacactatagttttgctaccct--gctgtag-gctgtagccatt--
upper sequence: GRMZM2G347447_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ28965 (Selaginella moellendorffii), 5'ss of exon 1
ATGATGATTCGTGCCGGTATTCCTACTGTGACAACCGGATATCCAATACCAAGTATACTCTGTGGAATTTTCTCCCGAAAAATTTATGGGAGCAATTCAGgtttgtatctgttcttcacttctcgacaataaagtagttccatctccatctagtcatttcattgcttcagcacctaaggtagttgcactttatccacttt
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AAGGGGATCGCTATCCCGATCTCTATTGCAACAACAGGGTATCCAACACCAAGTATAATCTCTGGAATTTCCTTCCCAAGAATCTATGGGAGCAATTCGGgtaagcttcacgctatcagaccggcattctatgattcttttgtttg-attcag-----------------------------------------------
upper sequence: GRMZM2G347447_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ13671 (Selaginella moellendorffii), 5'ss of exon 1
ATGATGATTCGTGCCGGTATTCCTACTGTGACAACCGGATATCCAATACCAAGTATACTCTGTGGAATTTTCTCCCGAAAAATTTATGGGAGCAATTCAGgtttgtatctgttcttcacttctcgacaataaagtagttccatctccatctagtcatttcattgcttcagcacctaaggtagttgcactttatccacttt
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AAGGGGATCGCTATCCCGATCTCTATTGCAACAACAGGGTATCCAACACCAAGTATAATCTCTGGAATTTCCTTCCCAAGAATCTATGGGAGCAATTCGGgtaagcttcacgctatcggaccggcattctatgattcttttgtttg-attcag-----------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|93013258|gb|EB638778.1|EB638778EST: AAGTATACTCTGTGGAATTTTCTCCCGAAAAATTTATGGGAGCAATTCAG GCGTTTCATGAATCAGTATTTTCTACTAATAGCCTGCCTTCAGTTGTGGTC
genomic: AAGTATACTCTGTGGAATTTTCTCCCGAAAAATTTATGGGAGCAATTCAGgtttgtatct ... agtatttcagGCGTTTCATGAATCAGTATTTTCTACTAATAGCCTGCCTTCAGTTGTGGTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGATGATTCGTGCCGGTATTCCTACTGTGACAACCGGATATCCAATACCAAGTATACTCTGTGGAATTTTCTCCCGAAAAATTTATGGGAGCAATTCAGgtttgtatctgttcttcacttctcgacaataaagtagttccatctccatctagtcatttcattgcttcagcacctaaggtagttgcactttatccacttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA