1 5' 3' | 2 5' 3' | 3 5' 3' |
TGAAGGATTCAAGATGAGCAACAGCCTGAATGCGTCGAGATTTCCGTTTTGTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAGgtatgatgttgaaatgattatctttaggtctggaaataactttcaatattcatctaggttggatttggctgctgctgttgatagatttgtcattttggtt...
species | Zea mays |
transcript | GRMZM2G343688_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAG GTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTTEST: gi|9732547|gb|BE511299.1|BE511299
genomic: TGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAGgtatgatgtt ... tgttcctaagGTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTT
EST: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAG GTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTTEST: gi|148958551|gb|EC904794.2|EC904794
genomic: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAGgtatgatgtt ... tgttcctaagGTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTT
EST: GTGCTGTGGTCATGGCTTCTACAACCCAGAGAATCGTGCTATTGCAGCAG GTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTTEST: gi|9952944|gb|BE639527.1|BE639527
genomic: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAGgtatgatgtt ... tgttcctaagGTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTT
EST: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAG GTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTTEST: gi|23357488|gb|BU645137.1|BU645137
genomic: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAGgtatgatgtt ... tgttcctaagGTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTT
EST: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAG GTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTTEST: gi|9461590|gb|BE453807.1|BE453807
genomic: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAGgtatgatgtt ... tgttcctaagGTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTT
EST: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAG GTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTTEST: gi|32840228|gb|CD979909.1|CD979909
genomic: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAGgtatgatgtt ... tgttcctaagGTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTT
EST: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAG GTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTTEST: gi|149104942|gb|EE290413.2|EE290413
genomic: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAGgtatgatgtt ... tgttcctaagGTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTT
EST: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAG GTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTTEST: gi|211061441|gb|FL105772.1|FL105772
genomic: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAGgtatgatgtt ... tgttcctaagGTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTT
EST: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAG GTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTTEST: gi|14203011|gb|BG836688.1|BG836688
genomic: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAGgtatgatgtt ... tgttcctaagGTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTT
EST: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAG GTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTT
genomic: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAGgtatgatgtt ... tgttcctaagGTTGAAGGGCCCAAATCACCTGAAGAGATGATAACAGTTCTTCAACGTGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGGATTCAAGATGAGCAACAGCCTGAATGCGTCGAGATTTCCGTTTTGTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAGgtatgatgttgaaatgattatctttaggtctggaaataactttcaatattcatctaggttggatttggctgctgctgttgatagatttgtcattttggtt
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