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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGGATTCAAGATGAGCAACAGCCTGAATGCGTCGAGATTTCCGTTTTGTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAGgtatgatgttgaaatgattatctttaggtctggaaataactttcaatattcatctaggttggatttggctgctgctgttgatagatttgtcattttggtt...

Basic information

species Zea mays
transcript GRMZM2G343688_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G343688_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g37630.1 (Oryza sativa), 5'ss of exon 1
TGAAGGATTCAAGATGAGCAACAGCCTGAATGCGTCGAGATTTCCGTTTTGTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAGgtatgatgttgaaatgattatctttaggtctg-gaaataactttcaatattcatctaggttggatttggctgctgct--gttgata-gatttgtcattttggtt
|||||| |||||||||||||||||||||||||| ||||| || || || || || ||||||||||| ||||| ||||||||||| ||| | |||| ||||||||| ||||||  || |  |  | | ||||| ||||||  ||  | |  | ||||| | |    |    |||| ||  ||| ||  | ||| | | | |    
TGAAGGGTTCAAGATGAGCAACAGCCTGAATGCATCGAGGTTCCCTTTCTGCGCGGTGGTCATGGCGTCTACGAACCAGAGAATTGTGTTGTTGCGGCAGgtatggtgttgatgtgctatttataatgtctgagaaatatgttggatttgttatctaagatcagctgctgtgctccttagtttatgtggtttctgactgt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86470852|gb|DY237222.1|DY237222
EST:     GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAG                         GTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT
genomic: GTGCTGTGGTCATGGCTTCTACAAACCAGAGAATCGTGCTATTGCAGCAGgtatgatgtt ... gacttggcagGTTCTCATAAGATTCCCAACTGGAGAGCGCAGAGAGCGGAGATTCTACAGT