Sequence
atgc intronic sequence ATGC exonic sequenceCCGGTCCCCGTAAGGTTGCCCCCGACGGCGGCGACTGCCGCCGGTGATGGGTGGAGAGACGTGTGCGGCGGCGGTTGCGGCTTCGCGATGGCCATCTCTGgtgacgtatcctgttctcttcctcattgttgccgtgcttattctctgatgctgccagttcattggttcttcgcgtgggatgtggtagatctgttgggggt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G337819_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g62810.4 (Oryza sativa), 5'ss of exon 1
---CCGGTCCCCGTAAGGTTGCCCCCGACGGCGGCGACTGCCGCCGGTGATGGGTGGAGAGACGTGTGCGGCGGCGGTTGCGGCTTCGCGATGGCCATCTCTGgtgacgtatcctg-ttctcttcctcattgttgccgtgcttattctctgatgctgccagttcattgg--ttcttcgcgtgggatgtggtagatctgttgggggt
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CTGCTCGGGCCCGTACCCGTGAGGCTACCGGCCGCG---GCGGGCGGCGATGGGTGGAGGGACGTATGCGGAGGCGGCTGCGGCTTCGCCATGGCCATCTCAGgtgacgtcccgtgactctccttctcattgctgttccgctcgtgctccgttgctctcgattcgttgggtttttcggggtgggctgtggtagatctactgga---
upper sequence: GRMZM2G337819_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA07G16400.1 (Glycine max), 5'ss of exon 1
------CCGGTCCCCGTAAGGTTGCCCCCGACGGCGGCGACTGCCGCCGGTGATGGGTGGAGAGACGTGTGCGGCGGCGGTTGCGGCTTCGCGATGGCCATCTCTGgt-gacgtatcctgttctcttcctcattgttgccgtgcttattctctgatgctg--ccagttcattggttcttcgcgtgggatgtggt--agatctgttgggggt
|||| || || | | | |||| || ||| |||||| ||| ||||| |||||||||||||| |||||||| ||||| ||||||||||| ||| || || | | | ||| | | | || | | | ||| |||| | | | | || || | | | |
CTGTCTCCGGCGCCGGTGAA--TCTCTCCGAT--CGTTCACT--CGCCGGAGATTCGTGGAAGGACGTGTGCGGCGGTGGTTGCGGATTCGCCATGGCCATCTCAGgttgattcctcaggccgttgactctattttgactaaattcatacaaaaaacttaatccacttcaaagatgttctagatctgaaaccgttagaaccagatc-----
upper sequence: GRMZM2G337819_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA18G40600.1 (Glycine max), 5'ss of exon 1
------CCGGTCCCCGTAAGGTTGCCCCCGACGGCGGCGACTGCCGCCGGTGATGGGTGGAGAGACGTGTGCGGCGGCGGTTGCGGCTTCGCGATGGCCATCTCTGgtgacgtatcctgttctcttcctcattgttgccgtgcttattctctgatgctgccagttcattggttcttcgcgtgggatgtggtagatctgttgggggt---------
|||| || || | | | |||| | |||| |||| ||| ||||| |||||||||||||| |||||||| ||||| |||| |||||| ||| | || | | | | | || || ||| || | || || |||| ||||| |||||||| | |
CTCTCTCCGGCGCCTGTGA--CTCTCTCCGAT--CCTTCACTG--GCCGTAGATTCGTGGAAGGACGTGTGCGGCGGTGGTTGCGGATTCGCCATGGTCATCTCAGgttga-----tttctcagtccgttgacactatcatgactaaactc--ataaaaaaacttaatcca--cttcaaagaagatgttctagatctgaaatcgttagaaccataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18659306|gb|BM500268.1|BM500268EST: GTGGAGAGACGTGTGCGGCGGCGGTTGCGGCTTCGCGATGGCCATCTCTG AGTCTGGAAAACTCCTCACTTGGGGTTCAGCTGATGACATGGGCCAAAGTT
genomic: GTGGAGAGACGTGTGCGGCGGCGGTTGCGGCTTCGCGATGGCCATCTCTGgtgacgtatc ... ttttcttcagAGTCTGGAAAACTCCTCACTTGGGGTTCAGCTGATGACATGGGCCAAAGTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCGGTCCCCGTAAGGTTGCCCCCGACGGCGGCGACTGCCGCCGGTGATGGGTGGAGAGACGTGTGCGGCGGCGGTTGCGGCTTCGCGATGGCCATCTCTGgtgacgtatcctgttctcttcctcattgttgccgtgcttattctctgatgctgccagttcattggttcttcgcgtgggatgtggtagatctgttgggggt
- - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA