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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAGAAGGCCTATGAGCTCTCCGTTCTATGCGACATCGACATCGCGCTCATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaattaattcctagcttcccggcccttttatttgcctgcatgcttcaattcggacgaattcgatcggacgaaatcaaatttgctaaccttaattttataataataataatataag

Basic information

species Zea mays
transcript GRMZM2G334225_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G334225_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g11970.1 (Oryza sativa), 5'ss of exon 1
TCAAGAAGGCCTATGAGCTCTCCGTTCTATGCGACATCGACATCGCGCTCATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaattaattcctagct--tcccggcccttttatttgcctgcatgcttcaattcggacgaattcgatcggacgaaatcaaatttgctaaccttaattttataataataataatataag
||||||||||||| ||||| ||||| || ||||||||||||||||| ||| |||||||||| ||||||   ||||||||||||||||||||| | |||||||   |  |||||| |   |       |    |   ||| ||  |  ||||| |  |||||        |   |  |    |||| || |  | |  | | ||||       |  ||       
TCAAGAAGGCCTACGAGCTGTCCGTCCTCTGCGACATCGACATCGCCCTCCTCATGTTCTCCCCCTCCGGCCGCCTCAGCCACTTCTCCGGCCGCCGCAGgtaaat-taattaagtttaaatcaaatcaaatcaaattaattaaccacatgcatgcattcgacttcgagcatgcaaatttgatcatatatagtcatgtaattttttgcgactttgtag------

upper sequence: GRMZM2G334225_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv07s0031g01140.t01 (Vitis vinifera), 5'ss of exon 1
TCAAGAAGGCCTATGAGCTCTCCGTTCTATGCGACATCGACATCGCGCTCATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaattaattcctagcttcccggcccttttatttgcctgcatgcttcaattcggacgaattcgatcggacgaaatcaaatttgctaaccttaattttataataataataatataag
|||| ||||| ||||||||||| || || ||||| ||||| ||||| ||||| |||||||| | ||||  ||| |||||||| || ||||||| | | ||||  |  |||    | |   || | |  ||    || ||| | ||  |  ||   | |  |    ||    |  || ||      ||| |    |||   ||| ||                
TCAAAAAGGCTTATGAGCTCTCAGTCCTCTGCGATATCGATATCGCCCTCATTATGTTCTCACACTCCGGTCGTCTCAGCCATTTTTCCGGCAAGAGAAGgt--gatcaaaacctccgatgcatgcatgcatgcttgtttacgtgtttttttttctccataatgtttaatacttaccaacattttttttccggtctt---tttgtag---------------

upper sequence: GRMZM2G334225_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S8_95V6.1 (Physcomitrella patens), 5'ss of exon 1
---TCAAGAAGGCCTATGAGCTCTCCGTTCTATGCGACATCGACATCGCGCTCATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaattaattcctagcttcccggcccttttatttgcctgcatgcttcaattcggacgaattcgatcggacgaaatcaaatttgctaac--cttaattttataataataataatataag
   | |||||||| |||||| | || ||||| |||||||||||||||||  | ||||||||||| || ||       ||||  || | |    | |   |||||| ||       |||  | | |||| | |    |     |   | ||||  ||||||        |  |  ||  | ||   |   ||||  |   || | || || | |              
TCATTAAGAAGGCATATGAGTTATCAGTTCTTTGCGACATCGACATCGCATTGATCATGTTCTCACCTTCAGGCAAACTCACTCAGTAC---AGTAATTGCAGgttcg-------aatctcgatcttcacagataatgcgcgtttattcatg--tcaattgcagtctttgtggacgt-caaagagatccttgcagattgctaagttctacagt--------------

upper sequence: GRMZM2G334225_T01 (Zea mays), 5'ss of exon 1
lower sequence: PP1S55_280V6.1 (Physcomitrella patens), 5'ss of exon 1
---TCAAGAAGGCCTATGAGCTCTCCGTTCTATGCGACATCGACATCGCGCTCATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtc-cgtgcaattaattcctagcttcccggcccttttatttgcctgcatgcttcaattcggacgaattcgat-cggacgaaatcaaatttgctaaccttaattttataataataataatataag
   |||||||||| |||||| | || || |||||||| || ||| | |||||||||||||||||||| ||       ||||  || |  |   |||   ||||||   |||  |   |||||||    | | |||        |||  | || ||     ||  | |  |   || |    | |||||  |     |||||                          
TCATCAAGAAGGCGTATGAGTTGTCAGTGCTATGCGATATTGACTTAGCGCTCATCATGTTCTCGCCGTCTGGCAAGCTCACGCAGTATT---GCAATTGCAGgtagtgtgatacatattcctactcccaccgcctgcagtagtgctagaat-ctctttgtcacatggctctaatgcctctgcaatcatgtaacaaaacctagg-----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71771389|gb|DR969326.1|DR969326
EST:     ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG                         GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: gi|211397005|gb|FL238530.1|FL238530
EST:     ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG                         GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: gi|211397006|gb|FL238531.1|FL238531
EST:     ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG                         GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: gi|211397001|gb|FL238526.1|FL238526
EST:     ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG                         GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: gi|211520163|gb|FL238537.1|FL238537
EST:     ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG                         GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: gi|211397002|gb|FL238527.1|FL238527
EST:     ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG                         GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: gi|74233594|gb|DT641508.1|DT641508
EST:     ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG                         GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: gi|211520159|gb|FL238533.1|FL238533
EST:     ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG                         GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: gi|211520162|gb|FL238536.1|FL238536
EST:     ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG                         GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: gi|211397004|gb|FL238529.1|FL238529
EST:     ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG                         GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: gi|211397003|gb|FL238528.1|FL238528
EST:     ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG                         GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: gi|211520161|gb|FL238535.1|FL238535
EST:     ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG                         GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGANG
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: gi|50333189|gb|CO528315.1|CO528315
EST:     ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG                         GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
EST: gi|211520160|gb|FL238534.1|FL238534
EST:     ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAG                         GATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG
genomic: ATCATGTTCTCGCCCTCCAATCGCCTCAGCCACTTCTCCGGCAGGCGCAGgtccgtgcaa ... ataatataagGATCGAGGACGTGATCACGAGGTACATCAATCTCCCGGAGCACGACAGAGG