Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCTCTTCTTCGAGGGCCAGCGGTCGGGCAAGCTGCCGCCGTCGCAGCGCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactccctagcgtggaggttatgtcaccggacggcctctctgctttcagtcctgttttatctgttgatggccggcgttcttgttgaatgtgtggcgggcag

Basic information

species Zea mays
transcript GRMZM2G331566_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G331566_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g21070.1 (Oryza sativa), 5'ss of exon 1
CATCCTCTTCTTCGAGGGCCAGCGGTCGGGCAAGCTGCCGCCGTCGCAGCGCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagta---ctccctagcgtggaggtt----atgtcaccgga--cggcctctctgctttcagtcctgttttatctgttgatggccggcgttcttgttgaatgtgtggcgggcag--------------
|||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||||||  | ||||| || |||||||||||   ||||  ||||| ||| |   ||||    |   | | ||    || ||  |||    |||  |    || ||  ||    | | ||| |   |  |   |  ||    ||      ||||  |  |              
CATCCTCTTCTTCGAGGGCCAGCGCTCCGGGAAGCTGCCGCCGTCGCAGCGCGTCTCCTGGCGGGGTGACTCCGGCCTCTCCGACGGCTCCTCCATCAAGgcaagaaactctccgctcctccgcgtttcaccatttcgtcggcattggcgccgtctctctctctctctctctctctctctctctctctctctcgccatggtctcatggcttgatgcgtttgtctctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148934809|gb|EC878856.2|EC878856
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|86474770|gb|DY241140.1|DY241140
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|148953446|gb|EE152948.2|EE152948
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|76917758|gb|DV166992.1|DV166992
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|93014836|gb|EB640356.1|EB640356
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|76013164|gb|DT940334.1|DT940334
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|94477648|gb|EB706606.1|EB706606
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|78078544|gb|DV506956.1|DV506956
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|76916881|gb|DV166588.1|DV166588
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|89757861|gb|DY687271.1|DY687271
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|76280981|gb|DV020549.1|DV020549
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|211413470|gb|FL176055.1|FL176055
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|148936942|gb|EC881098.2|EC881098
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|71317904|gb|DR795711.1|DR795711
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|211410927|gb|FL176046.1|FL176046
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|149000264|gb|EE037418.2|EE037418
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|76290456|gb|DV030024.1|DV030024
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|211410928|gb|FL176047.1|FL176047
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|211410926|gb|FL176045.1|FL176045
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|91051974|gb|EB162392.1|EB162392
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|86470282|gb|DY236652.1|DY236652
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|78085424|gb|DV513817.1|DV513817
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|71435909|gb|DR816959.1|DR816959
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|149008375|gb|EE040529.2|EE040529
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|211413472|gb|FL176057.1|FL176057
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|78089657|gb|DV518031.1|DV518031
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|76294264|gb|DV033832.1|DV033832
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|78115118|gb|DV533506.1|DV533506
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|101399233|gb|EB821490.1|EB821490
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|148947951|gb|EC893450.2|EC893450
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|211413464|gb|FL176049.1|FL176049
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|211413467|gb|FL176052.1|FL176052
EST:     CGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCYGGTGACAACGTCCAAGTTCG
genomic: CGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCG-CCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTC-AAGTTCG
EST: gi|149078461|gb|EE167241.2|EE167241
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|211413468|gb|FL176053.1|FL176053
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|91876421|gb|EB406378.1|EB406378
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|94475886|gb|EB704844.1|EB704844
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|71302056|gb|DR787107.1|DR787107
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|74240358|gb|DT648272.1|DT648272
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|76281525|gb|DV021093.1|DV021093
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|50337397|gb|CO532523.1|CO532523
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|211410920|gb|FL176039.1|FL176039
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|71438718|gb|DR819768.1|DR819768
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|74239147|gb|DT647061.1|DT647061
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|76290696|gb|DV030264.1|DV030264
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|71447157|gb|DR828207.1|DR828207
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|78085332|gb|DV513725.1|DV513725
EST:     CGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACCTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: CGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCAC-TCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|148932161|gb|EC875605.2|EC875605
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|71308792|gb|DR790634.1|DR790634
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|148963355|gb|EE014355.2|EE014355
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|71449498|gb|DR830548.1|DR830548
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|149009794|gb|EE041687.2|EE041687
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|148960078|gb|EE153322.2|EE153322
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|71332770|gb|DR803381.1|DR803381
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|211410923|gb|FL176042.1|FL176042
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|78089194|gb|DV517578.1|DV517578
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|76930798|gb|DV172509.1|DV172509
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|148939716|gb|EC884393.2|EC884393
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|50326794|gb|CO521920.1|CO521920
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|93283898|gb|EB676162.1|EB676162
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
EST: gi|71766258|gb|DR964195.1|DR964195
EST:     GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAG                         GTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG
genomic: GCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 104

CATCCTCTTCTTCGAGGGCCAGCGGTCGGGCAAGCTGCCGCCGTCGCAGCGCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGGTTCCCGATGGCGTTCAGCATGACGATGCTGGCGTGGAGCGTGGTGGAGT


Block sizes: 39 (upstream exon), 11 (downstream exon)
Score: 1

CATCCTCTTCTTCGAGGGCCAGCGGTCGGGCAAGCTGCCGCCGTCGCAGCGCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGGTTCCCGATGGCGTTCAGCATGACGATGCTGGCGTGGAGCGTGGTGGAGT


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 6

CATCCTCTTCTTCGAGGGCCAGCGGTCGGGCAAGCTGCCGCCGTCGCAGCGCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGGTTCCCGATGGCGTTCAGCATGACGATGCTGGCGTGGAGCGTGGTGGAGT


Block sizes: 46 (upstream exon), 44 (downstream exon)
Score: 9

CATCCTCTTCTTCGAGGGCCAGCGGTCGGGCAAGCTGCCGCCGTCGCAGCGCGTGTCCTGGCGCAGGGACTCGGGACTCTCCGACGGTCACTCCGCCAAGgtaagtactc ... tggcgggcagGTGGACCTGGTGGGCGGGTACCACGACGCTGGTGACAACGTCAAGTTCGGGTTCCCGATGGCGTTCAGCATGACGATGCTGGCGTGGAGCGTGGTGGAGT