1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCGGGTCGGAGTGAGGGGCCGCCATGGCGAGCGACGTGCCCATGACCCCGGAGCTCGAGCAGATCGACGGAGAGATCCACGATATCTTCCGCGCCCTCCAgtgagttcatgacttccctccctcgcctctgctgcttttggactgcgccctggagaagcggcaggcgcccgacgggtcagcggagaggttgccgcgcgct...
species | Zea mays |
transcript | GRMZM2G330650_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGCTCGAGCAGATCGACGGAGAGATCCACGATATCTTCCGCGCCCTCCA AAATGGATTCCAAAAGATGGATAAGATTAAAGATTCAAATAGGCAAGCTAAEST: gi|61119571|gb|DN560532.1|DN560532
genomic: GAGCTCGAGCAGATCGACGGAGAGATCCACGATATCTTCCGCGCCCTCCAgtgagttcat ... ttttatgcagAAATGGATTCCAAAAGATGGATAAGATTAAAGATTCAAATAGGCAAGCTAA
EST: CAGATCGACGGAGAGATCCACGATATCTTCCGCGCCCTCCA AAATGGATTCCAAAAGATGGATAAGATTAAAGATTCAAATAGGCAAGCTAAEST: gi|78122353|gb|DV540737.1|DV540737
genomic: CAGATCGACGGAGAGATCCACGATATCTTCCGCGCCCTCCAgtgagttcat ... ttttatgcagAAATGGATTCCAAAAGATGGATAAGATTAAAGATTCAAATAGGCAAGCTAA
EST: GAGCTCGAGCAGATCGACGGAGAGATCCACGATATCTTCCGCGCCCTCCA AAATGGATTCCAAAAGATGGATAAGATTAAAGATTCAAATAGGCAAGCTAAEST: gi|211320442|gb|FL345947.1|FL345947
genomic: GAGCTCGAGCAGATCGACGGAGAGATCCACGATATCTTCCGCGCCCTCCAgtgagttcat ... ttttatgcagAAATGGATTCCAAAAGATGGATAAGATTAAAGATTCAAATAGGCAAGCTAA
EST: GAGCTCGAGCAAATCGACGGAGAGATCCACGATATCTTCCGCGCCCTCCA AAATGGATTCCAAAAGATGGATAAGATTAAAGATTCAAATAGGCAAGCTAAEST: gi|148961350|gb|EE012080.2|EE012080
genomic: GAGCTCGAGCAGATCGACGGAGAGATCCACGATATCTTCCGCGCCCTCCAgtgagttcat ... ttttatgcagAAATGGATTCCAAAAGATGGATAAGATTAAAGATTCAAATAGGCAAGCTAA
EST: GAGCTCGAGCAGATCGACGGAGAGATCCACGATATCTTCCGCGCCCTCCA AAATGGATTCCAAAAGATGGATAAGATTAAAGATTCAAATAGGCAAGCTAA
genomic: GAGCTCGAGCAGATCGACGGAGAGATCCACGATATCTTCCGCGCCCTCCAgtgagttcat ... ttttatgcagAAATGGATTCCAAAAGATGGATAAGATTAAAGATTCAAATAGGCAAGCTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGGTCGGAGTGAGGGGCCGCCATGGCGAGCGACGTGCCCATGACCCCGGAGCTCGAGCAGATCGACGGAGAGATCCACGATATCTTCCGCGCCCTCCAgtgagttcatgacttccctccctcgcctctgctgcttttggactgcgccctggagaagcggcaggcgcccgacgggtcagcggagaggttgccgcgcgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC