Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACGCTTCCGTGGTACCGCGGACGGCGGAGAACTTCCGCGCGCTCTGCACAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatccattggatcgtcgcgagggctttacctctgcgcccttgcgtgatttgtgttctttgttgctatttgtcctgcggtttgtatttctaataact...

Basic information

species Zea mays
transcript GRMZM2G329306_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G329306_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g11320.1 (Oryza sativa), 5'ss of exon 1
CTACGCTTCCGTGGTACCGCGGACGGCGGAGAACTTCCGCGCGCTCTGCACAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatccattggatcgtcgcgagggctttacctctgc----gcccttgcgtgatttgtgttctttgttgctatttgtcctgcggtt-tgtatttctaataact
|||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||| || ||| ||||  || ||||  |||||  |  |        ||    |  | | |  ||   ||       |||| |   |  | ||  |   || |      | |||| ||  || |  | ||      
CTACGCGTCGGTGGTGCCGCGGACGGCGGAGAACTTCCGCGCGCTCTGCACCGGGGAGAAGGGCGTCGGCGCCGTCACCGGGAAGCACCTACACTACAAGgtgagtacggaaccgccgatttggagccatcgccgaggccgagatgcttgtggcgtccgggtagtccctttcggggctttctgccgtggtggaggtttag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211115907|gb|FL138988.1|FL138988
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211115909|gb|FL138990.1|FL138990
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTT-ATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211116702|gb|FL139000.1|FL139000
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211116709|gb|FL139007.1|FL139007
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211115905|gb|FL138986.1|FL138986
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|76931844|gb|DV172871.1|DV172871
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|149081859|gb|EE171017.2|EE171017
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211115914|gb|FL138995.1|FL138995
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211115911|gb|FL138992.1|FL138992
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211115910|gb|FL138991.1|FL138991
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211115903|gb|FL138984.1|FL138984
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|148991225|gb|EE032690.2|EE032690
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|9566471|gb|BE475980.1|BE475980
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211116705|gb|FL139003.1|FL139003
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211115913|gb|FL138994.1|FL138994
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211116703|gb|FL139001.1|FL139001
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|149051835|gb|EE155962.2|EE155962
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211115906|gb|FL138987.1|FL138987
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211116710|gb|FL139008.1|FL139008
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTT-AAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211115915|gb|FL138996.1|FL138996
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|91875475|gb|EB405432.1|EB405432
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211116707|gb|FL139005.1|FL139005
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211115912|gb|FL138993.1|FL138993
EST:     CAGGGGAGAAAGGCATCGGCGCCGCMAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|148956138|gb|EC901909.2|EC901909
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211117495|gb|FL139014.1|FL139014
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211116711|gb|FL139009.1|FL139009
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTACGAYTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211116701|gb|FL138999.1|FL138999
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGANAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211116713|gb|FL139011.1|FL139011
EST:     CAGGGGARAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAA
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAA
EST: gi|211116708|gb|FL139006.1|FL139006
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211115908|gb|FL138989.1|FL138989
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|32865832|gb|CF005514.1|CF005514
EST:     TCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGA
genomic: TCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATG-CTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGA
EST: gi|93284502|gb|EB676766.1|EB676766
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|149097483|gb|EE183354.2|EE183354
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211199272|gb|FL277459.1|FL277459
EST:     CAGGGGAGAAAGGCATCGGCGCCGC-AGCGGCAAGCCGCTTCACTTGARG                         GGCTCATGCTTCCACCGTG
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTG
EST: gi|211482025|gb|FL049376.1|FL049376
EST:     AGGGGAGAAAGGCATCGGCGCCGCCAGCGGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGA
genomic: AGGGGAGAAAGGCATCGGCGCCGCCAGCGG-CAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGA
EST: gi|71329029|gb|DR801214.1|DR801214
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|76017868|gb|DT945038.1|DT945038
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|18383760|gb|BM416960.1|BM416960
EST:     AAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCAC-TTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: AAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|149080490|gb|EE169521.2|EE169521
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211116712|gb|FL139010.1|FL139010
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|78083683|gb|DV512076.1|DV512076
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211115916|gb|FL138997.1|FL138997
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211116715|gb|FL139013.1|FL139013
EST:     CAGGGGWGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGACTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|148963888|gb|EE014998.2|EE014998
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211116704|gb|FL139002.1|FL139002
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211115904|gb|FL138985.1|FL138985
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|211117496|gb|FL139015.1|FL139015
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|71443879|gb|DR824929.1|DR824929
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|149012519|gb|EE042587.2|EE042587
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
EST: gi|78090325|gb|DV518699.1|DV518699
EST:     CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAG                         GGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC
genomic: CAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 76

CTACGCTTCCGTGGTACCGCGGACGGCGGAGAACTTCCGCGCGCTCTGCACAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGACACAACTGCTGGAGACGGAACTGGGGGAGAGTCAATTTATGGGTCCAAAT


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 82

CTACGCTTCCGTGGTACCGCGGACGGCGGAGAACTTCCGCGCGCTCTGCACAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGACACAACTGCTGGAGACGGAACTGGGGGAGAGTCAATTTATGGGTCCAAAT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 121

CTACGCTTCCGTGGTACCGCGGACGGCGGAGAACTTCCGCGCGCTCTGCACAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGACACAACTGCTGGAGACGGAACTGGGGGAGAGTCAATTTATGGGTCCAAAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 183

CTACGCTTCCGTGGTACCGCGGACGGCGGAGAACTTCCGCGCGCTCTGCACAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatcca ... aattttttagGGCTCATGCTTCCACCGTGTTATTAAAGGGTTTATGATTCAAGGGGGAGACACAACTGCTGGAGACGGAACTGGGGGAGAGTCAATTTATGGGTCCAAAT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTACGCTTCCGTGGTACCGCGGACGGCGGAGAACTTCCGCGCGCTCTGCACAGGGGAGAAAGGCATCGGCGCCGCCAGCGGCAAGCCGCTTCACTTTAAGgttcgatccattggatcgtcgcgagggctttacctctgcgcccttgcgtgatttgtgttctttgttgctatttgtcctgcggtttgtatttctaataact

- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA