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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGAGATGTGCAAGAACGTCAGGTACGCTAACGTCTATGACCCCGACGACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgtacttgtgctgctattccatatggaacatttcctctgttttatgagctaaatctcgtcatgcatgttattgcaaccgacag

Basic information

species Zea mays
transcript GRMZM2G328908_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G328908_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g17390.1 (Oryza sativa), 5'ss of exon 1
GTACGAGATGTGCAAGAACGTCAGGTACGCTAACGTCTATGACCCCGACGACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgtacttgtgctgctattccatatggaa-catttcctct-------gttttatgagcta-aatctcgtcatgcatgttattgcaaccgacag-
||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||| ||||||||||| ||||| |||  ||||||||| || ||||||       | || ||   ||  | | ||  |||  | |  |||        | | |||  | |  || ||||      | |  |||    ||    | 
GTACGAGATGTGCAAGAACGTCAGGTACGCCGACGTCTACGACCCCGACGACGACTGGCCCGAGCCCGCCGAGTACACCCACCAGCTCGGCGTGCTCAAGgtaaaccaaaaattatgtcactgctacgtacagaaatagtcactcaaagtggggatgtatatgttttaaactcgatcgagaagggattatgtccactcgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148991813|gb|EE033399.2|EE033399
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|211358043|gb|FL050070.1|FL050070
EST:     ACGACTGGCCGGAGCCCGCCGAATA-ACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCCTC-ACGAGGCTGGCGGGGATCGG-CA
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATC-TCCACGAGGCTGGCGGGGATCGGGCA
EST: gi|148947609|gb|EC893089.2|EC893089
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|148928663|gb|EC873223.2|EC873223
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|148941964|gb|EC886951.2|EC886951
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|13198763|gb|BG354565.1|BG354565
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|148956152|gb|EC901927.2|EC901927
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCCCGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|13490371|gb|BG517135.1|BG517135
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|148957850|gb|EC904001.2|EC904001
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|149081398|gb|EE170514.2|EE170514
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|149097400|gb|EE183253.2|EE183253
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|148996081|gb|EE035340.2|EE035340
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|116815101|gb|EC857735.1|EC857735
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|6827348|gb|AW330991.1|AW330991
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|148955410|gb|EC900982.2|EC900982
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|148934031|gb|EC878039.2|EC878039
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
EST: gi|149040129|gb|EE046780.2|EE046780
EST:     ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAG                         AATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC
genomic: ACGACTGGCCGGAGCCCGCCGAATACACGCACATGCTCGGCGTCCTAAAGgtacgtacgt ... caaccgacagAATAGGTACTATGATCTGATCATCTCCACGAGGCTGGCGGGGATCGGGCAC