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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCAACATGTCGCGCACGTCACGTTCGATAGGTTCCATGGATTCCTGGGGCTGCCCGTTGAATTCAAGCCCGAAGTGCCCCTCCGTGCTCCCAGCGTGAGgtatgtctcttagtgtccatcgtcaattcagattaattttaagttcacgcttccagaaatctgactttatttttgcagaatttacttatgcaataacatg...

Basic information

species Zea mays
transcript GRMZM2G321023_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G321023_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os12g05900.1 (Oryza sativa), 5'ss of exon 1
TGCAACATGTCGCGCACGTCACGTTCGATAGGTTCCATGGATTCCTGGGGCTGCCCGTTGAATTCAAGCCCGAAGTGCCCCTCCGTGCTCCCAGCGTGAGgtatgtctcttagtgtccatcgtcaattcagattaattttaagttcacgcttccagaaatctgactttatttttgcagaatttacttatgcaataacatg---
|||| || || ||||||||||| ||||||||||||||||||||||| ||||| ||||| || ||| ||||||| ||||||| ||| |||||||| | ||||| |||   | | |       |  |||||     | ||| | |  ||  |     | | |     |||| ||||      |  |    ||  | | | |    
TGCAGCACGTGGCGCACGTCACCTTCGATAGGTTCCATGGATTCCTCGGGCTCCCCGTGGAGTTCGAGCCCGAGGTGCCCCGCCGCGCTCCCAGTGCGAGgtctgttcatcactaggagctg--aattcttcagagtttcaggc-cattcagtttgtagttcaggtttaattttctgtgttcaaaaagtggtaaacctttttt

upper sequence: GRMZM2G321023_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g05540.1 (Oryza sativa), 5'ss of exon 1
TGCAACATGTCGCGCACGTCACGTTCGATAGGTTCCATGGATTCCTGGGGCTGCCCGTTGAATTCAAGCCCGAAGTGCCCCTCCGTGCTCCCAGCGTGAGgtatgtctcttagtgtccatcgtcaattcagat-taattttaagttcac--gcttccagaaatctgactttatttttgcag-----aatttacttatgcaataacatg
|||| || || || |||||||| ||||| ||||||||||||||||| || || ||||| ||  || ||||||| || |||| ||| |||||||| | |||||||    ||    |  | |   ||||   | | |  || | | | ||   | |||   | ||     || |   || |||     | | || || ||          
TGCAGCACGTGGCACACGTCACCTTCGACAGGTTCCATGGATTCCTCGGCCTCCCCGTGGAGCTCGAGCCCGAGGTTCCCCGCCGGGCTCCCAGTGCGAGgtattcggctcgaagctc-tgaacaatgtggttgttgttctgaatccaatggtttctgaacattcagtttcagactttcagttggaagtctatttttgtgg-------