1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATGACCTTCACTTTTTTGTCACCGCTGGAGATGATGAGAATGAGCTCATCTTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctattttctgttattactgcatatatatttgcctttgtatgtggttgttttgacgtgccgcttactgtgctttag
species | Zea mays |
transcript | GRMZM2G314679_T08 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|15323565|gb|BI478787.1|BI478787
genomic: ACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|4681229|gb|AI629899.1|AI629899
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|32908218|gb|CF013031.1|CF013031
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|211411155|gb|FK961654.1|FK961654
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|32938645|gb|CF043464.1|CF043464
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: ACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|4646698|gb|AI491558.2|AI491558
genomic: ACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGTCTGCGCTTGAGAACTTGGATTTGATACTTCTEST: gi|16925380|gb|BM078448.1|BM078448
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
EST: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAG GGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
genomic: TTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctatt ... tgtgctttagGGGTGATGTTGAGAAGCGGACTGCGCTTGAGAACTTGGATTTGATACTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGACCTTCACTTTTTTGTCACCGCTGGAGATGATGAGAATGAGCTCATCTTAGCAAGTGTACTACATGGTTTTTCTGATTCTGTTGGTCTTCTACTCAGgttgtctattttctgttattactgcatatatatttgcctttgtatgtggttgttttgacgtgccgcttactgtgctttag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG