1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGCAACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCGgtatggagtggagatccacacggcctttgtgttctataagtccatgtctcgcggatctgcttgctgcatgctccgctgctgctcgtgaaccttagttgatgagcttactatcttcctcttgtgtgaag
species | Zea mays |
transcript | GRMZM2G314679_T04 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCG GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGEST: gi|211282264|gb|FL038866.1|FL038866
genomic: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCGgtatggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCG GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGEST: gi|28187926|gb|CB179536.1|CB179536
genomic: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCGgtatggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCG GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGEST: gi|211282263|gb|FL038865.1|FL038865
genomic: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCGgtatggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCG GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGEST: gi|211282260|gb|FL038862.1|FL038862
genomic: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCGgtatggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCG GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAGEST: gi|211282261|gb|FL038863.1|FL038863
genomic: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCGgtatggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
EST: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCG GGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
genomic: GCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCGgtatggagtg ... ttgtgtgaagGGTGGAATAGGGAACGGCCATACACCATGGCGGATTTCTCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAACTCTCCCTCTCTGTCCTCTTCCTGTCGCCGCACTCATTTTCTCTTGCCGGTAAGGAGTGGAGATCCGCGTCCATCTTCTATTGATTAGGATACCGgtatggagtggagatccacacggcctttgtgttctataagtccatgtctcgcggatctgcttgctgcatgctccgctgctgctcgtgaaccttagttgatgagcttactatcttcctcttgtgtgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC