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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACTGGTTTGGCGCGAGACCATGGAGGGATCCCTGGAGGCGCGGCCCGGTGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctcgccgtcctcctttccttatgtttcggtttccttctcccgatttgactgcgaaacatcgagtgggttgagttgttgaactatttaggatct...

Basic information

species Zea mays
transcript GRMZM2G314386_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G314386_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g49530.1 (Oryza sativa), 5'ss of exon 1
-ACACTGGTTTGGCGCGAGACCATGGAGGGATCCCTGGAGGCGCGGCCCGGTGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctcgccgtcctcctttccttatgtttcggtttccttctcccgatttgactgcgaaa-catcgagtgggttgagttgttgaactatttaggatct-
  ||  |    |  | |||| |   |  |||||| ||||||||||||| || |||||  |||||||||| || |||||||||||| | ||||||||||||||||||||||||| | |||  |||  ||||  | |  ||  | | ||  ||||||  ||| |||  ||       | || | |    || |||   ||  || 
TTCATCGAGGCGATG-GAGAGCGGAGCCGGATCCTTGGAGGCGCGGCCGGGCGTCCTCGTCGTCGGCGCGCCTGGCGTCGGCAAGAGAACCATCCTCTCCCgtgagatctcgctgccctttttt--ttattatgcctttgacgtgtcttgatttggatgcaaaaatattcgacctgatgggatagcaaaatatgagggggctt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211311912|gb|FL092760.1|FL092760
EST:     TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC                         AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: gi|32837769|gb|CD977447.1|CD977447
EST:     TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC                         AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: gi|148970703|gb|EE021421.2|EE021421
EST:     TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC                         AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: gi|211311913|gb|FL092761.1|FL092761
EST:     TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCC                         AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: gi|32838159|gb|CD977837.1|CD977837
EST:     TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAG-TGTTCTTCCTCTCCC                         AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: gi|211311911|gb|FL092759.1|FL092759
EST:     TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCAKCCTCTCCC                         AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
EST: gi|211311910|gb|FL092758.1|FL092758
EST:     TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCNAGCGGACCATCCTCTCCC                         AGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC
genomic: TGTCCTACTCGTCGGCGCCCCGGGCGTCGGCAAGCGGACCATCCTCTCCCgtgagatctc ... tgaactttagAGTTTCTTGGAGCAGAAATACCTGACGTGCATGACTTATCATCCGGTGTGC