1 5' 3' | 2 5' 3' | 3 5' 3' |
TTGGTTTCAAGATGACAGAAGCCGTCATCAAACTGAATACTTCTTCTAACTGAATACTTCTTCCCAGCTGACAGATCAGATCAAACTTGACGTGTGTTAGgtaacaaagttgatgtagatggtgggaacaactgtgataagcaatgctacatgatttgctctctgattaaattattctcttgaactagattatgaactgcttagaaatataatctgctttgattttag
species | Zea mays |
transcript | GRMZM2G311165_T04 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGAATACTTCTTCCCAGCTGACAGATCAGATCAAACTTGACGTGTGTTAG GTATCAGAGNNNNNNNNCCAAGGCATGGTGCACTTCTAAAGAGCACATCTGEST: gi|31664649|gb|CD573582.1|CD573582
genomic: TGAATACTTCTTCCCAGCTGACAGATCAGATCAAACTTGACGTGTGTTAGgtaacaaagt ... ttgattttagGTATCAGAG-AAAAAAACCAAGGCATGGTGCACTTCTAAAGAGCACATCTG
EST: TGAATACTTCTTCCCAGCTGGCAGATCAGATCAAACTTGACGTGTGTTAG GTATCAGAGNNNNNNNCCAAGGCATGGTGCACTTCTAAAGAGCACATCTGC
genomic: TGAATACTTCTTCCCAGCTGACAGATCAGATCAAACTTGACGTGTGTTAGgtaacaaagt ... ttgattttagGTATCAGAGAAAAAAACCAAGGCATGGTGCACTTCTAAAGAGCACATCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGTTTCAAGATGACAGAAGCCGTCATCAAACTGAATACTTCTTCTAACTGAATACTTCTTCCCAGCTGACAGATCAGATCAAACTTGACGTGTGTTAGgtaacaaagttgatgtagatggtgggaacaactgtgataagcaatgctacatgatttgctctctgattaaattattctcttgaactagattatgaactgcttagaaatataatctgctttgattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA