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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTGTGTCCGTAGCGGCGACGACTGGGCGATCGCCGCCGCCTTAAGCCAGGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAGgtacgcccagaccttttccgttcctgctgtgcgaaaccgagcacccagatcctagcttaaggtacttgtagtcggatcggatctgatccgtttccgaact...

Basic information

species Zea mays
transcript GRMZM2G307252_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211360868|gb|FL288052.1|FL288052
EST:     GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAG                         AGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
genomic: GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAGgtacgcccag ... tttaatatagAGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
EST: gi|211517031|gb|FL210552.1|FL210552
EST:     GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAG                         AGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
genomic: GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAGgtacgcccag ... tttaatatagAGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
EST: gi|211360869|gb|FL288053.1|FL288053
EST:     GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAG                         AGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
genomic: GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAGgtacgcccag ... tttaatatagAGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
EST: gi|211517030|gb|FL210551.1|FL210551
EST:     GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAG                         AGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
genomic: GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAGgtacgcccag ... tttaatatagAGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
EST: gi|211360870|gb|FL288054.1|FL288054
EST:     GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAG                         AGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
genomic: GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAGgtacgcccag ... tttaatatagAGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
EST: gi|211360872|gb|FL288056.1|FL288056
EST:     GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAG                         AGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
genomic: GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAGgtacgcccag ... tttaatatagAGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
EST: gi|211360871|gb|FL288055.1|FL288055
EST:     GGTGCTCAGGTCTGCCACTTGRCACTTCGCCGGCGACGAGCACCTAACAG                         AGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
genomic: GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAGgtacgcccag ... tttaatatagAGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
EST: gi|211204810|gb|FL296834.1|FL296834
EST:     GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAG                         AGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGTC
genomic: GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAGgtacgcccag ... tttaatatagAGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
EST: gi|211360873|gb|FL288057.1|FL288057
EST:     GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAG                         AGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC
genomic: GGTGCTCAGGTCTGCCACTTGGCACTTCGCCGGCGACGAGCACCTAACAGgtacgcccag ... tttaatatagAGAGATGGCTGGTGGTTTTCGAGTACTGCATCTTGTGAGGCCATTTCTGGC