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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCCGCGCCGTCGGCCTCGTCGTCCGCAACCGCCGCCGCCGCTTCCGCATGTTCTCAGGCCTCCACGCCCTCGACGACGCCCAGCGCCGCAACATCCTGgtacgtacctccctctgggccggcaccggcgcagctgtacagccgtacaggccgtagaattggaatccttctccgcgtcgctttcgttgaattgcgccgt...

Basic information

species Zea mays
transcript GRMZM2G305159_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G305159_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g41580.1 (Oryza sativa), 5'ss of exon 1
GCGCCGCGCCGTCGGCCTCGTCGTCCGCAACCGCCGCCGCCGCTTCCGCATGTTCTCAGGCCTCCACGCCCTCGACGACGCCCAGCGCCGCAACATCCTGgtacgtac----ctccctctgggccggcaccggcgcagctgtacagccgtacaggccgtagaattggaatccttctccgcgtcgctttcgttgaattgcgccgt
||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| | | || ||||| ||||||| |||||||||||||| |||||||| |||||    | ||||||   ||  | ||||||     |  ||  |   |   ||  |     |    |    |   |   ||   ||  ||     |  | 
GCGCCGCGCCGTCGGCCTCATCGTCCGCAACCGCCGCCGCCGCTTCGGCAGGTTCTCCGACGTCGACGCCATCGACGAAGCCCAGCGCCGCAAGATCCTGgttcgtacgcagccccctctccccctcccccggcgggatcgc-cattccccc---ccccatccccgccgccgcggttgccccggcggccggcgagcgtggtaga