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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGGCCGCGGGGATGATGGCGCTCCACGAGGCCCTCCGCAACGTCTGCCTCGACTCGGACTGGACCTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtcacgcgtgtgcctccctgcttgttattccgtctagctaagctctctcagcttcacttcagttagttaccttggtgcacatgcag

Basic information

species Zea mays
transcript GRMZM2G302293_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G302293_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g25920.1 (Oryza sativa), 5'ss of exon 1
AAGAGGCCGCGGGGATGATGGCGCTCCACGAGGCCCTCCGCAACGTCTGCCTCGACTCGGACTGGACCTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtcacgcgtgtgcctccctgcttgttattccgtctagctaagctctctcagcttcacttcagttagttaccttggtgcacatgcag------
|||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||    |   |   |   | |      | |  |  |  |  || |||  |   |||  |||  |  |  || |  |  | |||  |      
AAGAGGCCGCCGGGATGATGGCTCTCCACGAGGCCCTCCGCAACGTCTGCCTCAACTCCGACTGGACTTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtgtaccacttaattaattaccacccctcctatgaatttttgc-ctcaaactctcatctcatctcttctcccta-tatatatgtcgtcgaag

upper sequence: GRMZM2G302293_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA12G27400.1 (Glycine max), 5'ss of exon 1
AAGAGGCCGCGGGGATGATGGCGCTCCACGAGGCCCTCCGCAACGTCTGCCTCGACTCGGACTGGACCTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtcacgcg-tgtgcctccctgcttgttattccgtctagctaagctctctcagcttcacttcagttagt-taccttggtgcacatgcag-----------------------------
|||| || |  ||||||||||| || || ||||||||| | |  || || ||| |||| || ||||| ||||| |||||||||||||| ||||||||||||||||   | |  | |  ||| ||   | |  ||| |  | | |  | | | |  |    ||||    | || |   |||  |    |                                 
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgcttctctctctctctctctctctctctttctgcgtggttgtg-tgtatatgtgctactttgaatggtgttttttgaggtgtttttctcaactgggtcttctccattttttttgcag

upper sequence: GRMZM2G302293_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 1
AAGAGGCCGCGGGGATGATGGCGCTCCACGAGGCCCTCCGCAACGTCTGCCTCGACTCGGACTGGACCTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtcacgcgtgtgcctccctgcttgttattccgtctagctaagct-ctctcagcttcacttca----gttagttaccttggtgcacatgcag------------------------
|||| || |  ||||||||||| || || ||||||||| | |  || || ||| |||| || ||||| ||||| |||||||||||||| ||||||||||||||||   |   | |  ||| |||  | || |    | |    | ||| || |||       || |    |||  ||   ||    ||| ||                           
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgcttcttctctctctctctgtattttgtatgttatgatgatgctactttcaatggtgttttatgaggtttttttttttttctcacctgggtcttctccattttattttcttgcag

upper sequence: GRMZM2G302293_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 1
AAGAGGCCGCGGGGATGATGGCGCTCCACGAGGCCCTCCGCAACGTCTGCCTCGACTCGGACTGGACCTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtcacgcgtgtgcctccctgcttgttattccgtctagctaagctctctcagcttcacttcagttagttaccttggtgcacatgcag---------------------
|||| || |  ||||||||||| || || || |||||| | |  ||||| ||| |||| |||||||| ||||| |||||||||||||| |||||||||||||||| || || | |  ||  |    | ||||||  |||  ||   || |||     | ||||||     | ||||     | ||    |                     
AAGAAGCTGTTGGGATGATGGCCCTTCATGATGCCCTCAGAAGAGTCTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgacatgcttct--ctttcattctcttattctctctttctgt-ctttctgtctctaacttcaaaccataacctcttacctcaactgggtctttgtccatttctcacag

upper sequence: GRMZM2G302293_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA12G35490.1 (Glycine max), 5'ss of exon 1
AAGAGGCCGCGGGGATGATGGCGCTCCACGAGGCCCTCCGCAACGTCTGCCTCGACTCGGACTGGACCTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtcacgcgtgtgcctccctgcttgttattccgtctagct--aagctc--tctcagct--tcacttcagttagttaccttggtgcacatgcag------------------------------------------------------------------------------------
|||| || |  ||||||||||| || || ||| ||||| | |  ||||| ||| |||| || ||||| ||||| |||||||||||||| ||||||||||||||||  |    |    |||  |  || ||| |||||  |  |  |||  |  | ||||    |  |  || |   ||       |  |  |  ||                                                                                    
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGACCCTCAGAAGAGTCTGTCTCAACTCAGAATGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgctatctatacttctcttttttttttaatccgtaaaaattgaagaccggtatcaggcaatacccacactcttttcaaccaattgagctatagtcctttggtctctctttctgtttcttaactctaacttcaaccaataacctcttacctcaactgggtcttgtccatttcatacag

upper sequence: GRMZM2G302293_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 1
AAGAGGCCGCGGGGATGATGGCGCTCCACGAGGCCCTCCGCAACGTCTGCCTCGACTCGGACTGGACCTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtcacgcgtgtgcctccctgcttgttattccgtctag-----ctaagctctctcagcttcacttcagttagttaccttggtgcacatgcag
|||| || |  ||||||||||| || || || |||||  | |  ||||| ||| |||| |||||||| ||||| || |||||||||||||||||||||||||||||| | | |    | |  |   | |   || ||||        |  | | ||      |    |||    | || |||        |||||
AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatgtctccctttctacactttttctatctatctgtctgtgattttttggttttcctgatattttctcaaacgggtatcttc-catttttgcag

upper sequence: GRMZM2G302293_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ05904 (Selaginella moellendorffii), 5'ss of exon 1
AAGAGGCCGCGGGGATGATGGCGCTCCACGAGGCCCTCCGCAACGTCTGCCTCGACTCGGACTGGACCTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtcacg------cgtgtgcctccctgcttgttattccgtctagctaag-ctctctcagcttcacttcagttagttaccttggtgcacatgcag----------------------------
  || |    ||   | |||||||| ||||| || || || || || ||  ||  ||| || ||||| ||||| |||||||||||||||||||| || ||||| |   |       | |  ||| || |   | |    |  |||  ||    |||||||  || | | |   ||   | | ||| | |       |                            
GGGAAGTGATGGCAGTCATGGCGCTGCACGAAGCGCTGCGGAATGTGTGTATCAGCTCAGATTGGACTTACTCTGTCTTCTGGACCATCCGTCCCCGACCgtaagaagcagctcaccttaagcccccttctctctctcactctctctctcgctctctctcttctcctcgttgtttcactgcattgctacgttgcttgctctgattcatctggctttcatctccag

upper sequence: GRMZM2G302293_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ26828 (Selaginella moellendorffii), 5'ss of exon 1
AAGAGGCCGCGGGGATGATGGCGCTCCACGAGGCCCTCCGCAACGTCTGCCTCGACTCGGACTGGACCTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtcacgcgtgtgcctccctgcttgttattccgtctagctaagctctctcagcttcacttcagttagttaccttggtgcacatgcag-----------------------
  || |    ||   | |||||||| ||||| || || || || || ||  ||  ||| || ||||| ||||| |||||||||||||||||||| || ||||| |   |   |   | |     |   |   ||  |||  ||      ||||  | |   |||| |   || |   | |||     | |                       
GGGAAGTGATGGCAGTCATGGCGCTGCACGAAGCGCTGCGGAATGTGTGTATCAGCTCAGATTGGACTTACTCTGTCTTCTGGACCATCCGTCCCCGACCgtaagaggcagctcgccttaagcccccttctctctctctctctctctcttctcctcgttgtttcactgcattgctacgttgcttgctctgattcatctggctttcatctccag