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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAGAACAGCCAGAACGCCCTCAAGTACGCCACCGAGACGCTCGCCCACAGGGGCCAGACCATCGTCCTCGTGCACGTCAACACCAAAGGCACCTCGGgcgagcaccatccttcatctccatgccgcggcgagcatcgtccatgtcagcttcgttcccgtgtgtttctgacgacggcgtgcgtgtgcatgtgcctgtgcctgtgcgtgcag

Basic information

species Zea mays
transcript GRMZM2G301647_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G301647_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g54590.1 (Oryza sativa), 5'ss of exon 1
GACAAGAACAGCCAGAACGCCCTCAAGTACGCCACCGAGACGCTCGCCCACAGGGGCCAGACCATCGTCCTCGTGCACGTCAACACCAAAGGCACCTCGGgcgagcac--catccttcatctccatgccgcggcgagcatcgtccatgtcagcttcgttcccgtgtgtttctgacgacggcgtgcgtgtgcatgtgcctgtgcctgtgcgtgcag
||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| ||||| |||||| ||||||| ||| |||| ||| | |||  |||||  |    ||  ||||| |  | |      |  ||| | ||   ||  || | | |||||||| | |  ||| | |  ||                     
GACAAGAACAGCCAGAACGCCCTCAAGTACGCCACGGAGTCGCTCGCCCACAAGGGCCAGACCATCGTGCTCGTCCACGTCCACACCAAGGGCTCCTCAGgcaaccactgcatcccccggacccccgccgctgaaatc-----tctcgtcggatt---tcaagtttttctctgacgatg-cacgcgcgcgtgtgcag------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89760757|gb|DY689040.1|DY689040
EST:     CAGGGGCCAGACCATCGTCCTCGTGCACGTCAACACCAAAGGCACCTCGG                         GTGGGGTGGCGGACGCCGCCGGGTACAAGCAGCCGACGGACCCGCAGATGA
genomic: CAGGGGCCAGACCATCGTCCTCGTGCACGTCAACACCAAAGGCACCTCGGgcgagcacca ... gtgcgtgcagGTGGGGTGGCGGACGCCGCCGGGTACAAGCAGCCGACGGACCCGCAGATGA
EST: gi|76912619|gb|DV164822.1|DV164822
EST:     CAGGGGCCAGACCATCGTCCTCGTGCACGTCAACACCAAAGGCACCTCGG                         GTGGGGTGGCGGACGCCGCCGGGTACAAGCAGCCGACGGACCCGCAGATGA
genomic: CAGGGGCCAGACCATCGTCCTCGTGCACGTCAACACCAAAGGCACCTCGGgcgagcacca ... gtgcgtgcagGTGGGGTGGCGGACGCCGCCGGGTACAAGCAGCCGACGGACCCGCAGATGA
EST: gi|78076030|gb|DV504464.1|DV504464
EST:     CAGGGGCCAGACCATCGTCCTCGTGCACGTCAACACCAAAGGCACCTCGG                         GTGGGGTGGCGGACGCCGCCGGGTACAAGCAGCCGACGGACCCGCAGATGA
genomic: CAGGGGCCAGACCATCGTCCTCGTGCACGTCAACACCAAAGGCACCTCGGgcgagcacca ... gtgcgtgcagGTGGGGTGGCGGACGCCGCCGGGTACAAGCAGCCGACGGACCCGCAGATGA
EST: gi|89762511|gb|DY690058.1|DY690058
EST:     CAGGGGCCAGACCATCGTCCTCGTGCACGTCAACACCAAAGGCACCTCGG                         GTGGGGTGGCGGACGCCGCCGGGTACAAGCAGCCGACGGACCCGCAGATGA
genomic: CAGGGGCCAGACCATCGTCCTCGTGCACGTCAACACCAAAGGCACCTCGGgcgagcacca ... gtgcgtgcagGTGGGGTGGCGGACGCCGCCGGGTACAAGCAGCCGACGGACCCGCAGATGA
EST: gi|160481517|gb|EY254349.1|EY254349
EST:     CTCGTGCCAC-TCAACACCAAAGGCACCTCGG                         GTGGGGTGGCGGACGCCGCCGGGTACAAGCAGCCGACGGACCCGCAGATGA
genomic: CTCGTG-CACGTCAACACCAAAGGCACCTCGGgcgagcacca ... gtgcgtgcagGTGGGGTGGCGGACGCCGCCGGGTACAAGCAGCCGACGGACCCGCAGATGA
EST: gi|89761195|gb|DY689309.1|DY689309
EST:     CAGGGGCCAGACCATCGTCCTCGTGCACGTCAACACCAAAGGCACCTCGG                         GTGGGGTGGCGGACGCCGCCGGGTACAAGCAGCCGACGGACCCGCAGATGA
genomic: CAGGGGCCAGACCATCGTCCTCGTGCACGTCAACACCAAAGGCACCTCGGgcgagcacca ... gtgcgtgcagGTGGGGTGGCGGACGCCGCCGGGTACAAGCAGCCGACGGACCCGCAGATGA