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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGATGGCTGAGGTGGCCGGCCTCATCCTGACGTTCCCCGAGGAGCGCCCCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTTgtactgatcgcttcgcagtgctctttgttgattttcttgtagacttttatttagctctgtgggatctttctctgctttggcaaaagtttgctgttgcctt...

Basic information

species Zea mays
transcript GRMZM2G300862_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G300862_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g70300.3 (Oryza sativa), 5'ss of exon 1
GAGGATGGCTGAGGTGGCCGGCCTCATCCTGACGTTCCCCGAGGAGCGCCCCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTTgtactgat--cgcttcgcagtgctctttgttgattttcttgtagactttt-atttagctctgtgggatctttctctgctttggcaaaagtttgctgttgcctt-
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GAGGATGCGGGAGGTGGCGGGCCTCATCCTCGCCTTCCCCGAGGAGCGCCCCGTCGTCGTCCTCTCCGCCATGGGGAAGACCACCAATCTCCTCCTCCTCgtactgtttccgccttccaattcccctcctc----ctcctctaggctatagatatgcctctctgtaatatgtgtctgctttaccaagtttttcctgaatccatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149101054|gb|EE187152.2|EE187152
EST:     CCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTT                         GCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAA
genomic: CCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTTgtactgatcg ... ttgtttttagGCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAA
EST: gi|148963037|gb|EE013988.2|EE013988
EST:     CCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTT                         GCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAA
genomic: CCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTTgtactgatcg ... ttgtttttagGCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAA
EST: gi|149104118|gb|EE289550.2|EE289550
EST:     CCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTT                         GCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAA
genomic: CCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTTgtactgatcg ... ttgtttttagGCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAA
EST: gi|50338980|gb|CO534106.1|CO534106
EST:     CCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTT                         GCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAA
genomic: CCGTCGTCGTTCTCTCTGCCATGGGGAAAACCACCAACAACCTTCTCCTTgtactgatcg ... ttgtttttagGCTGGAGAGAAGGCAGTAGGGTGTGGAGTTATCCATGTTTCTGAAATCGAA