1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCCAGGCCCCAGGACATGGACATGCCACGCAACGGGCTCAAGGAAGCCTACGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacggtatatatatgggatccatcttcttctccaattccacaatctcatcgtttcagtctgcttccatcactcatgctactagttcgtcgcag
species | Zea mays |
transcript | GRMZM2G300348_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGEST: gi|148973689|gb|EE024811.2|EE024811
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|91054433|gb|EB164851.1|EB164851
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|211364023|gb|FK959512.1|FK959512
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGC-ATCTATGEST: gi|74241172|gb|DT649086.1|DT649086
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|148946928|gb|EC892212.2|EC892212
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|93281436|gb|EB673700.1|EB673700
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|149008706|gb|EE040900.2|EE040900
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|211364022|gb|FK959511.1|FK959511
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|94472244|gb|EB701202.1|EB701202
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|101401215|gb|EB822286.1|EB822286
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|91877248|gb|EB407205.1|EB407205
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|148958128|gb|EC904326.2|EC904326
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTAEST: gi|148995759|gb|EE034988.2|EE034988
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTA
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|211364027|gb|FK959516.1|FK959516
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCNATATGGGCCATCTATGEST: gi|78104640|gb|DV523058.1|DV523058
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|76911964|gb|DV164511.1|DV164511
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|211364017|gb|FK959506.1|FK959506
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACEST: gi|76916879|gb|DV166586.1|DV166586
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGAC
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|71447701|gb|DR828751.1|DR828751
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|71775307|gb|DR973185.1|DR973185
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|211364025|gb|FK959514.1|FK959514
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|50325756|gb|CO520882.1|CO520882
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|93016198|gb|EB641718.1|EB641718
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|67028270|gb|CO457019.1|CO457019
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|71444100|gb|DR825150.1|DR825150
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|149073532|gb|EE161835.2|EE161835
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATGEST: gi|149075800|gb|EE164333.2|EE164333
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
EST: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCG GAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
genomic: CGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacgg ... ttcgtcgcagGAACTATGTTGATGACAGAGGAGCGGCGCCGCGCCATATGGGCCATCTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAGGCCCCAGGACATGGACATGCCACGCAACGGGCTCAAGGAAGCCTACGACCGCTGCGGCGAGATCTGTGAGGAGTATGCCAAGACGTTTTACCTCGgtacgtacggtatatatatgggatccatcttcttctccaattccacaatctcatcgtttcagtctgcttccatcactcatgctactagttcgtcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG