Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32849860|gb|CD989541.1|CD989541EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|60344179|gb|DN211152.1|DN211152EST: GAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: GAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|149008705|gb|EE040899.2|EE040899EST: ACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: ACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|12046181|gb|BF728320.1|BF728320EST: TAGGAATTGCGATCCATTTTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: TGGGAATTGCGAACCA-ACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|32920900|gb|CF025712.1|CF025712EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|71444099|gb|DR825149.1|DR825149EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTT---GA-GA -G--AG-A-AGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|60338830|gb|DN205803.1|DN205803EST: CTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: CTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|6827537|gb|AW331180.1|AW331180EST: CTAGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|22521337|gb|BU080148.1|BU080148EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|78104639|gb|DV523057.1|DV523057EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|50325755|gb|CO520881.1|CO520881EST: GGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: GGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|148946927|gb|EC892211.2|EC892211EST: ATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: ATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|32921193|gb|CF026005.1|CF026005EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|78179163|gb|DV549536.1|DV549536EST: CTAGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|32849806|gb|CD989487.1|CD989487EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|32921725|gb|CF026537.1|CF026537EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|32795287|gb|CD947523.1|CD947523EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|32923712|gb|CF028524.1|CF028524EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|148958127|gb|EC904325.2|EC904325EST: TGGGAA-TGCGGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: TGGGAATTGC-GAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|71775306|gb|DR973184.1|DR973184EST: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTTCCACAAGATGAGCTTGCACAGGCAGG
genomic: CTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
EST:
gi|149075799|gb|EE164332.2|EE164332EST: TACTCCGGGATGTTGGAGAGGA TGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
genomic: TACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGG
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
47 (upstream exon),
47 (downstream exon)
Score:
20CAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGGGCTCTCTGATGAGGACATCTTCAAAGGGGTCGTCACGAACCGGTGGAGA
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
183CAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGGGCTCTCTGATGAGGACATCTTCAAAGGGGTCGTCACGAACCGGTGGAGA
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
46CAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGGGCTCTCTGATGAGGACATCTTCAAAGGGGTCGTCACGAACCGGTGGAGA
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
155CAACCGAGTCTAAAGCAACAACTGAAAGCGTATACAGTGCTGCCTTGGCTCTGGGAATTGCGAACCAACTCACGAACATACTCCGGGATGTTGGAGAGGAgtaagtaaca ... tgtcttttagTGCTAGAAGAGGAAGGATATATTTACCACAAGATGAGCTTGCACAGGCAGGGCTCTCTGATGAGGACATCTTCAAAGGGGTCGTCACGAACCGGTGGAGA