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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGTGTCCTCGCCTCGCCTATCCGATCTGCCACCTCGCCGTCTCGCACGTTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttcctccagccccgcgatttcacctccacccccgcttctcctgcggcaatccatcgctcgcgtcgtccctactgggtgacaagagggcgacca...

Basic information

species Zea mays
transcript GRMZM2G181151_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211464055|gb|FL062026.1|FL062026
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|32919410|gb|CF024222.1|CF024222
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAA-
EST: gi|211464049|gb|FL062020.1|FL062020
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211045587|gb|FL062119.1|FL062119
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|31664290|gb|CD573015.1|CD573015
EST:     CCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: CCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211474170|gb|FL062078.1|FL062078
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211223693|gb|FL399500.1|FL399500
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211279000|gb|FL407011.1|FL407011
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211469118|gb|FL062056.1|FL062056
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211476688|gb|FL062089.1|FL062089
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211466586|gb|FL062037.1|FL062037
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211131888|gb|FL371457.1|FL371457
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211471640|gb|FL062065.1|FL062065
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211332062|gb|FL381794.1|FL381794
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|32851420|gb|CD991101.1|CD991101
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211124910|gb|FL425297.1|FL425297
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGCAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|33100666|gb|CF060626.1|CF060626
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211461534|gb|FL062016.1|FL062016
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211250194|gb|FL420138.1|FL420138
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGCAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211045584|gb|FL062116.1|FL062116
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211132918|gb|FL391883.1|FL391883
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211029340|gb|FL373997.1|FL373997
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211461533|gb|FL062015.1|FL062015
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCNACTTGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|9953932|gb|BE640515.1|BE640515
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211172669|gb|FL375066.1|FL375066
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211464053|gb|FL062024.1|FL062024
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211439866|gb|FL422480.1|FL422480
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211427007|gb|FL427232.1|FL427232
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211034220|gb|FL370384.1|FL370384
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211459002|gb|FL061993.1|FL061993
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211332674|gb|FL416300.1|FL416300
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211466587|gb|FL062038.1|FL062038
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211466594|gb|FL062045.1|FL062045
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|211448189|gb|FL410292.1|FL410292
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
EST: gi|24462502|gb|BM660033.1|BM660033
EST:     TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAG                         GTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC
genomic: TTCCTTTCCCCAACTCCCCAGCGCCTCTCCGCGCCGCGATCCAGATCCAGgtacgtcttc ... ccctgtgcagGTTGTTCAGCATGGGTCTGGTGAAGGAAGGCGTCGACATGGAGGAGGGAAC