1 5' 3' | 2 5' 3' | 3 5' 3' |
GACAAGGAGCTCGAGCTCTACCGCATCTTCCAGGCCATCGACGTCGAACACAACGGATGTATCCTGCCCGAGGAGCTCTGGCACGCGCTCGTCAAGGCTGgtaactgcaatgccaccgctcttcgccttattctttccatttagtgacccctctagcatagctcgattttggggtgctgtggaatactccaatgagtttg...
species | Zea mays |
transcript | GRMZM2G180971_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAACGGATGTATCCTGCCCGAGGAGCTCTGGCACGCGCTCGTCAAGGCTG GTATACAAATTGATGATGAAGAGCTTGCAAGATTTGTTGAGCATGTGGATAEST: gi|148940839|gb|EC885670.2|EC885670
genomic: CAACGGATGTATCCTGCCCGAGGAGCTCTGGCACGCGCTCGTCAAGGCTGgtaactgcaa ... atgtttgcagGTATAGAAATTGATGATGAAGAGCTTGCAAGATTTGTTGAGCATGTGGATA
EST: CAACGGATGTATCCTGCCCGAGGAGCTCTGGCACGCGCTCGTCAAGGCTG GTATAGAAATTGATGATGAAGAGCTTGCAAGATTTGTTGAGCATGTGGATAEST: gi|67020358|gb|CO449107.1|CO449107
genomic: CAACGGATGTATCCTGCCCGAGGAGCTCTGGCACGCGCTCGTCAAGGCTGgtaactgcaa ... atgtttgcagGTATAGAAATTGATGATGAAGAGCTTGCAAGATTTGTTGAGCATGTGGATA
EST: TGTATCCTGCCCGAGGAGCTCTGGCACGCGCTCGTCAAGGCTG GTATAGAAATTGATGATGAAGAGCTTGCAAGATTTGTTGAGCATGTGGATAEST: gi|148941387|gb|EC886303.2|EC886303
genomic: TGTATCCTGCCCGAGGAGCTCTGGCACGCGCTCGTCAAGGCTGgtaactgcaa ... atgtttgcagGTATAGAAATTGATGATGAAGAGCTTGCAAGATTTGTTGAGCATGTGGATA
EST: CAACGGATGTATCCTGCCCGAGGAGCTCTGGCACGCGCTCGTCAAGGCTG GTATAGAAATTGATGATGAAGAGCTTGCAAGATTTGTTGAGCATGTGGATAEST: gi|71323061|gb|DR798204.1|DR798204
genomic: CAACGGATGTATCCTGCCCGAGGAGCTCTGGCACGCGCTCGTCAAGGCTGgtaactgcaa ... atgtttgcagGTATAGAAATTGATGATGAAGAGCTTGCAAGATTTGTTGAGCATGTGGATA
EST: CAACGGATGTATCCTGCCCGAGGAGCTCTGGCACGCGCTCGTCAAGGCTG GTATAGAAATTGATGATGAAGAGCTTGCAAGATTTGTTGAGCATGTGGATAEST: gi|211406225|gb|FL080923.1|FL080923
genomic: CAACGGATGTATCCTGCCCGAGGAGCTCTGGCACGCGCTCGTCAAGGCTGgtaactgcaa ... atgtttgcagGTATAGAAATTGATGATGAAGAGCTTGCAAGATTTGTTGAGCATGTGGATA
EST: CACCGGATGTATCCTGCCCGAAGAGCTCTGGCACGCGCTCGTCAAGGCTG GTATAGAAATTGATGATGAAGAGCTTEST: gi|211406222|gb|FL080920.1|FL080920
genomic: CAACGGATGTATCCTGCCCGAGGAGCTCTGGCACGCGCTCGTCAAGGCTGgtaactgcaa ... atgtttgcagGTATAGAAATTGATGATGAAGAGCTT
EST: CAACGGATGTATCCTGCCCGAGGAGCTCTGGCACGCGCTCGTCAAGGCTG GTATAGAAATTGATGATGAAGAGCTTGCAAGATTTGTTGAGCATGTGGATA
genomic: CAACGGATGTATCCTGCCCGAGGAGCTCTGGCACGCGCTCGTCAAGGCTGgtaactgcaa ... atgtttgcagGTATAGAAATTGATGATGAAGAGCTTGCAAGATTTGTTGAGCATGTGGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAAGGAGCTCGAGCTCTACCGCATCTTCCAGGCCATCGACGTCGAACACAACGGATGTATCCTGCCCGAGGAGCTCTGGCACGCGCTCGTCAAGGCTGgtaactgcaatgccaccgctcttcgccttattctttccatttagtgacccctctagcatagctcgattttggggtgctgtggaatactccaatgagtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaccgc