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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCCTCGCCTGTGGCTCTGCTATGATGCTTTTCTCGTGGGCCACCCGTCTTGTTGAGGCCCCTAAGACCGACCTGGACTTCTGGAAAGTTCTTTTCCCGgtgagttgattattttgtgccagtaacttcttttattttatttacctgcctggaaaagtgtaactgaatttggtgattaactgatgaag

Basic information

species Zea mays
transcript GRMZM2G180720_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G180720_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os08g08840.2 (Oryza sativa), 5'ss of exon 2
CTCCCTCGCCTGTGGCTCTGCTATGATGCTTTTCTCGTGGGCCACCCGTCTTGTTGAGGCCCCTAAGACCGACCTGGACTTCTGGAAAGTTCTTTTCCCGgtgagttgattattttgtgccagtaacttcttttat-tttatt-tacctgcctggaaaagtgtaactgaatttggtgattaac-tgatgaag
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CTCCCTTGCCTGCGGCTCTGCGATGATGCTTGTCTCATGGGCCACTCGCCTTGTTGAGGCCCCCAAGACTGACCTAGATTTCTGGAAAGTTCTTTTCCCGgtgagtggaatctttt-tcttggcaattatttgtatatttgctgtgcctgcttgggcaagcatgattgattttggctattttccttttgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67042737|gb|CO468992.1|CO468992
EST:     TTGTTGAGGCCCCTAAGACCGACCTGGACTTCTGGAAAGTTCTTTTCCCG                         GTTGCTGTGGCGCATACAATTGGCCATGTTGCTGCTACAGTGAGCATGTCT
genomic: TTGTTGAGGCCCCTAAGACCGACCTGGACTTCTGGAAAGTTCTTTTCCCGgtgagttgat ... actgatgaagGTTGCTGTGGCGCATACAATTGGCCATGTTGCTGCTACAGTGAGCATGTCT
EST: gi|211029602|gb|FL384590.1|FL384590
EST:     TTGTTGAGGCCCCTAAGACCGACCTGGACTTCTGGAAAGTTCTTTTCCCG                         GTTGCTGTGGCGCATACAATTGGCCATGTTGCTGCTACAGTGAGCATGTCT
genomic: TTGTTGAGGCCCCTAAGACCGACCTGGACTTCTGGAAAGTTCTTTTCCCGgtgagttgat ... actgatgaagGTTGCTGTGGCGCATACAATTGGCCATGTTGCTGCTACAGTGAGCATGTCT
EST: gi|67042492|gb|CO468747.1|CO468747
EST:     TTGTTGAGGCCCCTAAGACCGACCTGGACTTCTGGAAAGTTCTTTTCCCG                         GTTGCTGTGGCGCATACAATTGGCCATGTTGCTGCTACAGTGAGCATGTCT
genomic: TTGTTGAGGCCCCTAAGACCGACCTGGACTTCTGGAAAGTTCTTTTCCCGgtgagttgat ... actgatgaagGTTGCTGTGGCGCATACAATTGGCCATGTTGCTGCTACAGTGAGCATGTCT
EST: gi|6021272|gb|AW066200.1|AW066200
EST:     TTGTTGAGGCCCCTAAGACCGACCTGGACTTCTGGAAAGTTCTTTTCCCG                         GTTGCTGTGGCGCATACAATTGGCCATGTTGCTGCTACAGTGAGCATGTCT
genomic: TTGTTGAGGCCCCTAAGACCGACCTGGACTTCTGGAAAGTTCTTTTCCCGgtgagttgat ... actgatgaagGTTGCTGTGGCGCATACAATTGGCCATGTTGCTGCTACAGTGAGCATGTCT