Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCAGATCGCGGCCGCGGCGACTCCCCGAGCAGAAGAACCCGATCGAACGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctttccaagatctccgtgctcgatagctcacatcgattcccgccagcgggttccctcaattttttcggtctctcttctccccccgggaccagcag

Basic information

species Zea mays
transcript GRMZM2G179737_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110515503|gb|EE020091.1|EE020091
EST:     ATCCCTGCTGCGAGCGAAG                         GGTTCCCTTCCAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: ATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|93012420|gb|EB637940.1|EB637940
EST:     CTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211031968|gb|FL265568.1|FL265568
EST:     CGCGGCCG-GNCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTRTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211029489|gb|FL265550.1|FL265550
EST:     CGCGGCCG-GGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211029480|gb|FL265541.1|FL265541
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|18385304|gb|BM418503.1|BM418503
EST:     GGCGGCGACTCCCCGATCTCAGATCCCTGCTGTGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: GGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211039303|gb|FL265600.1|FL265600
EST:     CGCGGCCGCSGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGCAG                       
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCG-A--AGgtaagatctt ... ggaccagc
EST: gi|211034407|gb|FL265570.1|FL265570
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         TGTTCGATTCGAGCAGAGATGGCGGCGGCATGGGCGGTGCTGGCTTTGTTC
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|13198687|gb|BG354489.1|BG354489
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|16746010|gb|BM032440.1|BM032440
EST:     TCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: TCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211027041|gb|FL265533.1|FL265533
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         TGTTCGATTCGAGCAGAGATGGCGGCGGCATGGGCGGTGCTGGCTTTGTTC
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211029491|gb|FL265552.1|FL265552
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|18384807|gb|BM418006.1|BM418006
EST:     GGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: GGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|91054011|gb|EB164429.1|EB164429
EST:     GGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: GGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211031963|gb|FL265563.1|FL265563
EST:     CGCGGCCG-SGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211036856|gb|FL265584.1|FL265584
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211029481|gb|FL265542.1|FL265542
EST:     CGCGGCCGSGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|18384808|gb|BM418007.1|BM418007
EST:     GGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: GGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211036863|gb|FL265591.1|FL265591
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         TGTTCGATTCGAGCAGAGATGGCGGCGGCATGGGCGGTGCTGGCTTTGTTC
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|18660119|gb|BM500696.1|BM500696
EST:     CGCGNCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|15198881|gb|BI423536.1|BI423536
EST:     CGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|5268511|gb|AI770475.1|AI770475
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|149014431|gb|EE044038.2|EE044038
EST:     CCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211128891|gb|FL240344.1|FL240344
EST:     CGCGGCCG-GGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211039304|gb|FL265601.1|FL265601
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211031958|gb|FL265558.1|FL265558
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         TGTTCGATTCGAGCAGAGATGGCGGCGGCATGGGCGGTGCTGGCTTTGTTC
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211031966|gb|FL265566.1|FL265566
EST:     CGCGGCCGC-GCGGCGACTCCCCGATCTCAGATCCCTRCTGCGARCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|7216914|gb|AW563036.1|AW563036
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211029479|gb|FL265540.1|FL265540
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211036867|gb|FL265595.1|FL265595
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211036869|gb|FL265597.1|FL265597
EST:     CGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGACGAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTT
genomic: CGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGA--AGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTT
EST: gi|211031967|gb|FL265567.1|FL265567
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211029478|gb|FL265539.1|FL265539
EST:     GCGGCCGCGGCGGCGACTCCCCGATCTCAGATCNGCTGCTGCGAGCGAAG                         GGYTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: GCGGCCGCGGCGGCGACTCCCCGATCTCAGATC-CCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|13198621|gb|BG354423.1|BG354423
EST:     CGC-G-CG-GGCGGCGACT-CCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GG-TCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211036860|gb|FL265588.1|FL265588
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211036861|gb|FL265589.1|FL265589
EST:     CGCGGCCGSGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211036859|gb|FL265587.1|FL265587
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211029490|gb|FL265551.1|FL265551
EST:     CGCGGCCGC-GCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211027045|gb|FL265537.1|FL265537
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|20507208|gb|BQ279531.1|BQ279531
EST:     CCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|18384806|gb|BM418005.1|BM418005
EST:     GGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: GGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|71432608|gb|DR813658.1|DR813658
EST:     GGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: GGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211036857|gb|FL265585.1|FL265585
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCT-GCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211031965|gb|FL265565.1|FL265565
EST:     CGCGGCCGC-GCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211027046|gb|FL265538.1|FL265538
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211036870|gb|FL265598.1|FL265598
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211031960|gb|FL265560.1|FL265560
EST:     CGCGGCCGC-GCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|149110590|gb|EE294202.2|EE294202
EST:     GGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: GGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
EST: gi|211027040|gb|FL265532.1|FL265532
EST:     CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAG                         GGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG
genomic: CGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 250

GATTCAGATCGCGGCCGCGGCGACTCCCCGAGCAGAAGAACCCGATCGAACGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTGCTCGTCGCGGCGCAGGTGGCGTCAGCGGCGCAGGTCACGGCGCCAGCGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 447

GATTCAGATCGCGGCCGCGGCGACTCCCCGAGCAGAAGAACCCGATCGAACGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTGCTCGTCGCGGCGCAGGTGGCGTCAGCGGCGCAGGTCACGGCGCCAGCGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 416

GATTCAGATCGCGGCCGCGGCGACTCCCCGAGCAGAAGAACCCGATCGAACGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTGCTCGTCGCGGCGCAGGTGGCGTCAGCGGCGCAGGTCACGGCGCCAGCGT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 316

GATTCAGATCGCGGCCGCGGCGACTCCCCGAGCAGAAGAACCCGATCGAACGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctt ... ggaccagcagGGTTCCATTCGAGCAGAGATGGCGGCGGCATGGGAGGTGCTGGCTGTGTTGCTCGTCGCGGCGCAGGTGGCGTCAGCGGCGCAGGTCACGGCGCCAGCGT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTCAGATCGCGGCCGCGGCGACTCCCCGAGCAGAAGAACCCGATCGAACGCGGCCGCGGCGGCGACTCCCCGATCTCAGATCCCTGCTGCGAGCGAAGgtaagatctttccaagatctccgtgctcgatagctcacatcgattcccgccagcgggttccctcaattttttcggtctctcttctccccccgggaccagcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC