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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCCAGGTTATTAGTCTTGTTGGAGCACAAAAGGCAACTTTGCATCCTGATGATATTTTATTACTTGCGAATTTCATTCTGTCCTCTGGATCTTTTAGgtaatcatgacatactctgaaatgaaggatttgaaccttgaataatgttcttacagtttgttttttatgcag

Basic information

species Zea mays
transcript GRMZM2G179732_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179732_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g74460.2 (Oryza sativa), 5'ss of exon 8
ATTTCCAGGTTATTAGTCTTGTTGGAGCACAAAAGGCAACTTTGCATCCTGATGATATTTTATTACTTGCGAATTTCATTCTGTCCTCTGGATCTTTTAGgtaatcatgac-----atactctgaaatgaaggatttgaaccttgaataatgttcttacagt-ttgttttttatgcag
        ||||||||||| || ||||||||||||||||||||||||||||||||||||||  ||||| | ||||||||  ||||||||| ||||||||||||||||| ||     | |||||||||||    || |  || ||||   | ||||||||    || | ||| ||||||
--------GTTATTAGTCTAGTGGGAGCACAAAAGGCAACTTTGCATCCTGATGATATTTTTCTACTTTCAAATTTCATATTGTCCTCTGAATCTTTTAGgtaatcatcacgacacacactctgaaatggta-atctttactttgag--acgttcttactacattttctttaatgcag