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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGACCACATCGAGCACCACCGCATCCACGGCCTCGTCTACTTCGCCGACGAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAGgtaaaggcgcacatcgtacctctcttagtttccccccactcgcgtttacgtacacgcattcgcgaccctgtttccgattggaattgattgggtcaattctgtactggaatttgaaacccattatgatcgatgttgcgttacatag

Basic information

species Zea mays
transcript GRMZM2G179504_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G179504_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os10g13810.1 (Oryza sativa), 5'ss of exon 1
TCGACCACATCGAGCACCACCGCATCCACGGCCTCGTCTACTTCGCCGACGAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAGgtaaag----gcgcacatcgtacctctctta-gtttccccccactcgcgtttacgtacacgcattcgcgaccctgtttccgattggaattgattgggtcaattctgtactggaattt--------gaaacccattatgatcgat-gttg--cgttacatag---------------
| || |||||||||||||||||| | |||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||| |||| |||    ||   |||     | | |||  |         |||    |||   ||  |  ||| |   ||  ||  |   || || |   | |    |||||  || |||| |||        ||||| ||||     | || | ||  |  |  |                  
TGGATCACATCGAGCACCACCGCCTACACGGCATCGTCTACTTCGCCGACGAGGACAACGTCTACTCCCTTGACCTCTTCTACCATCTTCGCGACATTAGgtgaagtgtagctatcatgacgtcacacttctgacaatttagactgttcttttgatatcctgattggaatccaagt--caatttagattacgtcgtactaattcgttattggagtttcggtacacgaaactcattggtgccaattggtgaacactgaacgatattctggtgtttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50332431|gb|CO527557.1|CO527557
EST:     GAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAG                         GAGTTTTGGCACCTGGCCAGTCGCAATGCTGGGCGTGGGGAAGAGCAAGAC
genomic: GAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAGgtaaaggcgc ... cgttacatagGAGTTTTGGCACCTGGCCAGTCGCAATGCTGGGCGTGGGGAAGAGCAAGAC
EST: gi|71772175|gb|DR970112.1|DR970112
EST:     GAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAG                         GAGTTTTGGCACCTGGCCAGTCGCAATGCTGGGCGTGGGGAAGAGCAAGAC
genomic: GAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAGgtaaaggcgc ... cgttacatagGAGTTTTGGCACCTGGCCAGTCGCAATGCTGGGCGTGGGGAAGAGCAAGAC
EST: gi|76019947|gb|DT947117.1|DT947117
EST:     GAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCCCGGCATAAG                         GAGTTTTGGCACCTGGCCAGTCGCAATGCTGGGCGTGGGGAAGAGCAAGAC
genomic: GAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAGgtaaaggcgc ... cgttacatagGAGTTTTGGCACCTGGCCAGTCGCAATGCTGGGCGTGGGGAAGAGCAAGAC
EST: gi|50337294|gb|CO532420.1|CO532420
EST:     GAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAG                         GAGTTTTGGCACCTGGCCAGTCGCA
genomic: GAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAGgtaaaggcgc ... cgttacatagGAGTTTTGGCACCTGGCCAGTCGCA
EST: gi|76932469|gb|DV173052.1|DV173052
EST:     GAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAG                         GAGTTTTGGCACCTGGCCAGTCGCAATGCTGGGCGTGGGGAAGAGCAAGAC
genomic: GAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAGgtaaaggcgc ... cgttacatagGAGTTTTGGCACCTGGCCAGTCGCAATGCTGGGCGTGGGGAAGAGCAAGAC
EST: gi|76012484|gb|DT939654.1|DT939654
EST:     GAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAG                         GAGTTTTGGCACCTGGCCAGTCGCAATGCTGGGC
genomic: GAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAGgtaaaggcgc ... cgttacatagGAGTTTTGGCACCTGGCCAGTCGCAATGCTGGGC
EST: gi|78084269|gb|DV512662.1|DV512662
EST:     GAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAG                         GAGTTTTGGCACCTGGCCAGTCGCAATGCTGGGCGTGGGGAAGAGCAAGAC
genomic: GAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAGgtaaaggcgc ... cgttacatagGAGTTTTGGCACCTGGCCAGTCGCAATGCTGGGCGTGGGGAAGAGCAAGAC
EST: gi|76928245|gb|DV171538.1|DV171538
EST:     GAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAG                         GAGTTTTGGCACCTGGCCAGTCGCAATGCTGGGCGTGGGGAAGAGCAAGAC
genomic: GAGGACAACGTGTACTCCCTTGACCTCTTCGACCAGCTTCGCGGCATAAGgtaaaggcgc ... cgttacatagGAGTTTTGGCACCTGGCCAGTCGCAATGCTGGGCGTGGGGAAGAGCAAGAC
EST: gi|76932451|gb|DV173051.1|DV173051
EST:     CAGCTTCGCGGCATAAG                         GAGTTTTGGCACCTGCCCAGTCGCAATGCTGGGCGTGGGGAAGAGCAAGAC
genomic: CAGCTTCGCGGCATAAGgtaaaggcgc ... cgttacatagGAGTTTTGGCACCTGGCCAGTCGCAATGCTGGGCGTGGGGAAGAGCAAGAC