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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGATCAGGTGCTGCACGGTCGCGCGGCGGCGCGACGGATGCGTCGGAGGCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaattgccagttgccaaagcccaaagctctgtttgtttttccgtttcccctttcttctgttcgccctaactctagcctcggtcctcggctgtgcag

Basic information

species Zea mays
transcript GRMZM2G179429_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211269398|gb|FK962410.1|FK962410
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211269388|gb|FK962400.1|FK962400
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCCGC
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTC-GC
EST: gi|31364620|gb|CD448975.1|CD448975
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|71757661|gb|DR955598.1|DR955598
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211266946|gb|FK962386.1|FK962386
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211271829|gb|FK962415.1|FK962415
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATNAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|50329493|gb|CO524619.1|CO524619
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211271834|gb|FK962420.1|FK962420
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|89248029|gb|DY619815.1|DY619815
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|31909721|gb|CD651061.1|CD651061
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211266952|gb|FK962392.1|FK962392
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211271828|gb|FK962414.1|FK962414
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|91057069|gb|EB167487.1|EB167487
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|91048409|gb|EB158827.1|EB158827
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|76014913|gb|DT942083.1|DT942083
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211269390|gb|FK962402.1|FK962402
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211269397|gb|FK962409.1|FK962409
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|93283894|gb|EB676158.1|EB676158
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|18383735|gb|BM416935.1|BM416935
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211266949|gb|FK962389.1|FK962389
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|78112542|gb|DV530936.1|DV530936
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|18384245|gb|BM417444.1|BM417444
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|148958245|gb|EC904458.2|EC904458
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211266950|gb|FK962390.1|FK962390
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211269393|gb|FK962405.1|FK962405
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGAC
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGAC
EST: gi|71307153|gb|DR789747.1|DR789747
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|71773571|gb|DR971469.1|DR971469
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211269392|gb|FK962404.1|FK962404
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211266944|gb|FK962384.1|FK962384
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211271830|gb|FK962416.1|FK962416
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211271827|gb|FK962413.1|FK962413
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211269395|gb|FK962407.1|FK962407
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGGAGAGTGACGATGAGGAGGTCCCCGAA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGG-AGAGTGACGATGAGGAGGTCCCCGAA
EST: gi|87153892|gb|DY398681.1|DY398681
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|161585980|gb|EY957507.1|EY957507
EST:     CGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGACGGTCCCCGAAGGTCGC
genomic: CGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGA-GGTCCCCGAAGGTCGC
EST: gi|211266945|gb|FK962385.1|FK962385
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACG
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACG
EST: gi|211269400|gb|FK962412.1|FK962412
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|148956262|gb|EC902060.2|EC902060
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|22489636|gb|BU049559.1|BU049559
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211266948|gb|FK962388.1|FK962388
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|148959747|gb|EC905644.2|EC905644
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|148932548|gb|EC876363.2|EC876363
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
EST: gi|211271831|gb|FK962417.1|FK962417
EST:     GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATG                         CTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA
genomic: GCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 106

GAGGATCAGGTGCTGCACGGTCGCGCGGCGGCGCGACGGATGCGTCGGAGGCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCAACGTACCCAGATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 96

GAGGATCAGGTGCTGCACGGTCGCGCGGCGGCGCGACGGATGCGTCGGAGGCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCAACGTACCCAGATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 101

GAGGATCAGGTGCTGCACGGTCGCGCGGCGGCGCGACGGATGCGTCGGAGGCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCAACGTACCCAGATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGAT


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 118

GAGGATCAGGTGCTGCACGGTCGCGCGGCGGCGCGACGGATGCGTCGGAGGCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaat ... ggctgtgcagCTGTAGAGGACGACGCGGAGAGTGACGATGAGGAGGTCCCCGAAGGTCGCAACGTACCCAGATCCTCCAAAAAGGAGAAGAAAAGGCAAGAGCGAGAGAT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGATCAGGTGCTGCACGGTCGCGCGGCGGCGCGACGGATGCGTCGGAGGCCTGGGGCTGCCGGAGCAGGCTCCTCTACTGCGTCAACTAGCCGCAATGgtaccacaattgccagttgccaaagcccaaagctctgtttgtttttccgtttcccctttcttctgttcgccctaactctagcctcggtcctcggctgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC