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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCGTCAGCGTCTCGGCTGGGACGTCGGCCCTGCCGAGATGTATAAGGCCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAGgtataacctctcttgccgttcccgtttttttcttgcggatctatcgcttggggtgtcggttttccacgagctataggattaagtggtggatctgtagaat...

Basic information

species Zea mays
transcript GRMZM2G179308_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13490967|gb|BG517731.1|BG517731
EST:     CNNNNNNNNCTCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAG                         TTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTG
genomic: CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAGgtataacctc ... catttttcagTTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTG
EST: gi|211230015|gb|FL290150.1|FL290150
EST:     CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAG                         TTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTG
genomic: CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAGgtataacctc ... catttttcagTTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTG
EST: gi|211192902|gb|FL091618.1|FL091618
EST:     CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAG                         TTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCGTTG
genomic: CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAGgtataacctc ... catttttcagTTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTG
EST: gi|211232064|gb|FL290151.1|FL290151
EST:     CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAG                         TTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCGTTG
genomic: CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAGgtataacctc ... catttttcagTTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTG
EST: gi|211232066|gb|FL290153.1|FL290153
EST:     CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAG                         TTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCGTTG
genomic: CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAGgtataacctc ... catttttcagTTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTG
EST: gi|211232068|gb|FL290155.1|FL290155
EST:     CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAG                         TTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCGTTG
genomic: CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAGgtataacctc ... catttttcagTTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTG
EST: gi|211232070|gb|FL290157.1|FL290157
EST:     CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAG                         TTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGTTGCAGCGTTG
genomic: CCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAGgtataacctc ... catttttcagTTAGAACTTTGTGGACAAGAAGTTGTGAATGCCATCAGTGCTGCAGCCTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGCGTCAGCGTCTCGGCTGGGACGTCGGCCCTGCCGAGATGTATAAGGCCGTGCGGCCGCGGCACGGGTGGGACGTCGGCCCCGCCGAGATGTATCAGgtataacctctcttgccgttcccgtttttttcttgcggatctatcgcttggggtgtcggttttccacgagctataggattaagtggtggatctgtagaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG