1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGACCATGAAACAACCATATACCCAAAGCGAGGTAAAGTGTTTGATGCTTCAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAGgtaattattgtttgctttcttttttcggttcacgtgttgtcttgaatctgttattgtgttgttgatacatggccagcttttttacag
species | Zea mays |
transcript | GRMZM2G179097_T05 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGCTGCTAGAAGGTGTAAAATATCTACATGACCATTTGGGTGCTTCATAG GGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAATEST: gi|211527636|gb|FL412986.1|FL412986
genomic: AGCTGCTAGAAGGTGTAAAATATCTACATGA-CAATTGGGTGCTTCATAGgtaattattg ... ttttttacagGGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAAT
EST: CAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAG GGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAATEST: gi|211214733|gb|FL396537.1|FL396537
genomic: CAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAGgtaattattg ... ttttttacagGGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAAT
EST: CAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAG GGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAATEST: gi|211527625|gb|FL412975.1|FL412975
genomic: CAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAGgtaattattg ... ttttttacagGGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAAT
EST: CAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAG GGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAATEST: gi|6095722|gb|AW120389.1|AW120389
genomic: CAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAGgtaattattg ... ttttttacagGGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAAT
EST: CAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAG GGATCTGAAGACCTCAAATCTTTTGTTGAATAACCG-GGTGAGTTAAAAATEST: gi|211219367|gb|FL386088.1|FL386088
genomic: CAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAGgtaattattg ... ttttttacagGGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAAT
EST: CAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAG GGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAATEST: gi|6056442|gb|AW090952.1|AW090952
genomic: CAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAGgtaattattg ... ttttttacagGGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAAT
EST: CAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAG GGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAATEST: gi|6020498|gb|AW065426.1|AW065426
genomic: CAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAGgtaattattg ... ttttttacagGGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAAT
EST: AGCTGCTAGAAGGTGT-AGGGAGTGTACATGACAATTGGGTGCTTCATAG GGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAATEST: gi|22543030|gb|BU093468.1|BU093468
genomic: AGCTGCTAGAAGGTGTAAAATA-TCTACATGACAATTGGGTGCTTCATAGgtaattattg ... ttttttacagGGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAAT
EST: CAGCTGCTAGAAGGTGTAAAATATCTGCATGACAATTGGGTGCTTCATAG GGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGGGAGTTAAAAATEST: gi|211055687|gb|FL451729.1|FL451729
genomic: CAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAGgtaattattg ... ttttttacagGGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAAT
EST: CAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAG GGATCTGAAGACCTCAAATCTTTT-TTGAATAACCGTGGTGAGTTAAAAAT
genomic: CAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAGgtaattattg ... ttttttacagGGATCTGAAGACCTCAAATCTTTTGTTGAATAACCGTGGTGAGTTAAAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGACCATGAAACAACCATATACCCAAAGCGAGGTAAAGTGTTTGATGCTTCAGCTGCTAGAAGGTGTAAAATATCTACATGACAATTGGGTGCTTCATAGgtaattattgtttgctttcttttttcggttcacgtgttgtcttgaatctgttattgtgttgttgatacatggccagcttttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT