1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGGATGCTGCCAAGGATGCCGGTGCGTGTGCTGCTCGCCGAAGGCGACGACTCCACGCGCCACGTCATCTCCGCGCTGCTCCGCAAGTGCGGCTACCGAGgtgcgcaccgtctccgcccgcgaatcgaatcgtttgattacttgatatctcttttttttccgattgcttggtatctgttttagactgcgtgggttaagct...
species | Zea mays |
transcript | GRMZM2G179024_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCCACGCGCCACGTCATCTCCGCGCTGCTCCGCAAGTGCGGCTACCGAG TTGCTGCAGCCTCAGATGGTGTGAAGGCGTGGGACCTATTAAAGGAAAAATEST: gi|211231778|gb|FL045878.1|FL045878
genomic: CTCCACGCGCCACGTCATCTCCGCGCTGCTCCGCAAGTGCGGCTACCGAGgtgcgcaccg ... attcatgcagTTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACCTATTAAAGGAAAAAT
EST: CTCCACGCGCCACGTCATCTCCGCGCTGCTCCGCAAGTGCGGCTACCGAG TTGCTGCAGCCTCAGATGGTGTGAAGGCGTGGGACCTATTAAAGGAAAAATEST: gi|148939284|gb|EC883782.2|EC883782
genomic: CTCCACGCGCCACGTCATCTCCGCGCTGCTCCGCAAGTGCGGCTACCGAGgtgcgcaccg ... attcatgcagTTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACCTATTAAAGGAAAAAT
EST: CTCCACGCGCCACGTCATCTCCGCGCTGCTCCGCAAGTGCGGCTACCGAG TTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACCTATTAAAGGAAAAATEST: gi|148953113|gb|EE152594.2|EE152594
genomic: CTCCACGCGCCACGTCATCTCCGCGCTGCTCCGCAAGTGCGGCTACCGAGgtgcgcaccg ... attcatgcagTTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACCTATTAAAGGAAAAAT
EST: CTCCACGCGCCACGTCATCTCCGCGCTGCTCCGCAAGTGCGGCTACCGAG TTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACCTATTAAAGGAAAAAT
genomic: CTCCACGCGCCACGTCATCTCCGCGCTGCTCCGCAAGTGCGGCTACCGAGgtgcgcaccg ... attcatgcagTTGCTGCAGCCTCTGATGGTGTGAAGGCGTGGGACCTATTAAAGGAAAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGATGCTGCCAAGGATGCCGGTGCGTGTGCTGCTCGCCGAAGGCGACGACTCCACGCGCCACGTCATCTCCGCGCTGCTCCGCAAGTGCGGCTACCGAGgtgcgcaccgtctccgcccgcgaatcgaatcgtttgattacttgatatctcttttttttccgattgcttggtatctgttttagactgcgtgggttaagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcccgc