Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCAGAGCTTGGGCAGACTCTCCTCAGTAACTATAGTTTTTTTTGTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttgtttatgcttctagctcttgtatttaggctttttgggttcttgctcattccgttgagcttccag

Basic information

species Zea mays
transcript GRMZM2G178415_T05
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148940231|gb|EC885000.2|EC885000
EST:     GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
genomic: GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
EST: gi|71426412|gb|DR807462.1|DR807462
EST:     NNNGTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
genomic: TTTGTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
EST: gi|148966781|gb|EE017869.2|EE017869
EST:     GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCCTTGAACAGGATGAAT
genomic: GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
EST: gi|78089717|gb|DV518091.1|DV518091
EST:     GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
genomic: GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
EST: gi|149080931|gb|EE170020.2|EE170020
EST:     GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
genomic: GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
EST: gi|91867926|gb|EB399854.1|EB399854
EST:     AGAAAAAATATATCCTTGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
genomic: AGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
EST: gi|78092010|gb|DV520384.1|DV520384
EST:     GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
genomic: GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
EST: gi|71323470|gb|DR798386.1|DR798386
EST:     GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
genomic: GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
EST: gi|149096793|gb|EE182577.2|EE182577
EST:     GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
genomic: GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
EST: gi|78077526|gb|DV505960.1|DV505960
EST:     GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
genomic: GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
EST: gi|211162030|gb|FL334317.1|FL334317
EST:     NNNGTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
genomic: TTTGTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
EST: gi|93012302|gb|EB637822.1|EB637822
EST:     GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
genomic: GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
EST: gi|71328974|gb|DR801177.1|DR801177
EST:     GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
genomic: GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
EST: gi|50330056|gb|CO525182.1|CO525182
EST:     GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
genomic: GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
EST: gi|148994453|gb|EE034100.2|EE034100
EST:     GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
genomic: GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
EST: gi|17921570|gb|BM259221.1|BM259221
EST:     TGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
genomic: TGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT
EST: gi|149074752|gb|EE163182.2|EE163182
EST:     GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAG                         ATAACATTTCAGGTGTGCTTCTGAAGAGAGATTTCGTTGAACAGGATGAAT
genomic: GTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttg ... gagcttccagATAACATTTCAGGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCCAGAGCTTGGGCAGACTCTCCTCAGTAACTATAGTTTTTTTTGTTCCTTGGGAGGATAGAAAAAATATATCCTTGGTTTTCTTGAACAGgtttgatttgtttatgcttctagctcttgtatttaggctttttgggttcttgctcattccgttgagcttccag

- - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT