1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGCACGCACGGACGACGCACCGCACACTACCCGGCGGTGGAACTCCTCGCCCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTgtaaggctctccgcctgcgcccgttctccgcgctcgttctcgccgccgtcgtccgtgttttgcctgattcagcagttcggcgaaaccggtgcgaagattg...
species | Zea mays |
transcript | GRMZM2G178415_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|148981458|gb|EE027657.2|EE027657
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|148981458|gb|EE027657.2|EE027657
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|148981458|gb|EE027657.2|EE027657
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|149082772|gb|EE171995.2|EE171995
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|149082772|gb|EE171995.2|EE171995
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|149082772|gb|EE171995.2|EE171995
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|149082772|gb|EE171995.2|EE171995
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|71766899|gb|DR964836.1|DR964836
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|71766899|gb|DR964836.1|DR964836
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|71766899|gb|DR964836.1|DR964836
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|71766899|gb|DR964836.1|DR964836
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|149072180|gb|EE160421.2|EE160421
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|149072180|gb|EE160421.2|EE160421
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|149072180|gb|EE160421.2|EE160421
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|149072180|gb|EE160421.2|EE160421
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|50325462|gb|CO520588.1|CO520588
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|50325462|gb|CO520588.1|CO520588
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|50325462|gb|CO520588.1|CO520588
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|50325462|gb|CO520588.1|CO520588
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|148931517|gb|EC874558.2|EC874558
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|148931517|gb|EC874558.2|EC874558
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|148931517|gb|EC874558.2|EC874558
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|148931517|gb|EC874558.2|EC874558
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTATAACATTTEST: gi|149101283|gb|EE187396.2|EE187396
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTG---T-A--ATAAC---Tgtaaggctct ... aa
EST: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACT GTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAATGCATTGGCAGCA
genomic: CCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTgtaaggctct ... aacatttcagGTGTGCTTCTGAAGGGAGATTTCGTTGAACAGGATGAATGCATTGGCAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCACGCACGGACGACGCACCGCACACTACCCGGCGGTGGAACTCCTCGCCCGCGTCGCTGCTCCGGTCTCCGCGCTGCTAGCCGCCGACTGTAATAACTgtaaggctctccgcctgcgcccgttctccgcgctcgttctcgccgccgtcgtccgtgttttgcctgattcagcagttcggcgaaaccggtgcgaagattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgccgcc